Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3520 |
Symbol | tgt |
ID | 5105988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3879053 |
End bp | 3880186 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640504772 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_001189000 |
Protein GI | 146308535 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.1241 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.323798 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCGCA CCTGTCGCAT GTCCTTCGAG TTGCTGGCTA CCGACGGCAA GGCCCGTCGC GGCCGCCTGA CCTTCCCGCG TGGCGTGGTG GAAACGCCCG CTTTCATGCC GGTGGGCACC TACGGCACGG TCAAGGGCAT GCTGCCGCGG GACGTCGAAG ACATCGGCGC GCAGATCATC CTCGGCAACA CCTTCCACCT GTGGCTGCGC CCAGGCATGG AGGTGATCAA GAAACATGGC GACCTGCATG ACTTCATGCA GTGGCAGGGG CCGATCCTCA CCGACTCCGG CGGTTTCCAG GTGTTCAGTC TGGGCGCGAT GCGCAAGATT AAGGAAGAGG GCGTTTACTT CGCCTCGCCG GTCGATGGCG CCAAAGTCTT CATGGGCCCG GAAGAGTCGA TGCAGGTGCA GCGCGACCTG GGCTCGGACA TCGTGATGAT TTTCGACGAA TGCACGCCGT ACCCGGCGGA GTTCGATGTG GCCAAGCGTT CCATGGAGCT GTCGCTGCGT TGGGCCAAGC GCTCCAAGAC CGCCCATGGC GAGAGCACGG CGGCGTTGTT CGGCATCGTC CAGGGCGGCA TGCACGAAGA GCTGCGCATG CGCTCGCTGG AGGGCTTGTG CGAAATCGGC TTCGACGGTC TGGCCATCGG TGGGCTGTCG GTCGGCGAGC CGAAGGAAGA GATGATCCGC GTGCTCGACT TCCTGCCGCC GCACATGCCG GCCGACAAGC CGCGCTATCT GATGGGCGTG GGCAAGCCGG AAGACCTGGT CGAGGGCGTG CGCCGTGGCG TGGACATGTT CGATTGCGTG ATGCCGACGC GTAACGCGCG CAACGGCCAC CTGTTCGTCG ATACCGGCGT GGTGAAGATC CGCAATGCCG TGCACAAGCA CGACGATTCG CCGCTGGACC CGACCTGCGA CTGTTACACC TGCAAACACT TCTCGCGCGC TTATCTGCAT CATCTGGACA AGTGCGGCGA AATGCTCGGT AGCATGCTCA ATACCATCCA TAACTTGCGG CATTATCAGC GGGTTATGGC TGGTTTGCGC GAGGCTATCG GACAGGGTAC ATTGGCCGCC TTTGTCGAAA CCTTCTATGC CAAGCGCGGC CTGCCCGTGC CGCCGCTGGA CTGA
|
Protein sequence | MSRTCRMSFE LLATDGKARR GRLTFPRGVV ETPAFMPVGT YGTVKGMLPR DVEDIGAQII LGNTFHLWLR PGMEVIKKHG DLHDFMQWQG PILTDSGGFQ VFSLGAMRKI KEEGVYFASP VDGAKVFMGP EESMQVQRDL GSDIVMIFDE CTPYPAEFDV AKRSMELSLR WAKRSKTAHG ESTAALFGIV QGGMHEELRM RSLEGLCEIG FDGLAIGGLS VGEPKEEMIR VLDFLPPHMP ADKPRYLMGV GKPEDLVEGV RRGVDMFDCV MPTRNARNGH LFVDTGVVKI RNAVHKHDDS PLDPTCDCYT CKHFSRAYLH HLDKCGEMLG SMLNTIHNLR HYQRVMAGLR EAIGQGTLAA FVETFYAKRG LPVPPLD
|
| |