Gene Pmen_3518 details

Gene Information

• Locus tag: Pmen_3518
• Symbol: secD
• ID: 5105986
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas mendocina ymp
• Kingdom: Bacteria
• Replicon accession: NC_009439
• Strand: -
• Start bp: 3876743
• End bp: 3878611
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640504770
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001188998
• Protein GI: 146308533
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0852936
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 0.362188
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCAATA AATATCCCCT TTGGAAGTAC CTGCTGATCC TCGCCGTATT GGCGATCGGC 
CTGGTCTACT CCATCCCCAA TCTCTATCCG GATGATCCGG CCGTGCAGAT CAGTGGTGCC 
AGTTCGGCGC TGAGCATCGA GCAGGGCGAC GTCGAGCGCG CCAGCAAGGC GCTGCAGGAC 
GCCGGCATCC AGGTCAAGGC TGCCAGCCTC GATGAGCGCG GCCGTGGCGG TCTGATCCGT 
CTGACCAAGC AGGATGACCA GTTGCCGGCC AAGGACATCG TCCGCCGCGT GCTGGGCGAC 
GACTACGTGG TGGCGCTGAA CCTGGCGCAA ACCACTCCCG ACTGGCTGCG CAGCCTGGGC 
GCCAGCCCGA TGAAGCTTGG CCTGGACCTG TCCGGTGGCG TGCACTTCCT GCTGGAAGTG 
GACATGGACA AGGCGCTGGA TGTGCGGCGC AAGGTCTACG AAGGCGAGAT CAAGAGCCTG 
CTGCGCAAGG AGCGCATCCG CTACCGCAGC ATGCCGGAGC AGGGCGGCCG TATTCAGCTC 
GGCTTCGCCG ACAGCGATAC GCTGGAAAAA GCCCAGCGTC TGATCCGCAA GGACTACAAC 
GATTTCGAGC TGACCACCGT CGAGCGCGGC GGCCAGCAGG TGCTGCAGCT GGCGCTGACT 
CAGGCGAAGA TCGCCGAGAT TCGCGAATAC TCCATTCGTC AGAACCTCAC CACCGTGCGT 
AACCGCGTCA ACGAGCTGGG TGTGGCCGAG CCGCTGGTGC AACGTCAGGG CGCCAACCGC 
ATCGTGGTCG AGCTGCCGGG TGTGCAGGAT ACCGCCGAAG CCAAGCGTAT CCTCGGCAAG 
ACCGCCAACC TGGAGTTCCG CCTGCAGGCC GATCTCGACG CGCCGCGCGG TGCCACCGAG 
ACCTTCGGTT TCCGCGAGGA GGGGCGTCCG CCGGTGCAGC TCGAGCGTGA GCTGATCATC 
ACCGGTGACC AGGTCACCGA TGCCCAGGCC AGCTTCGACG AGAACGGCCG CCCGCAGGTG 
AACATCCGCC TCGACGGCCA CGGCGGCGAT CTGATGAACC GCGCCACGCG CAACAACGTT 
GGCCGCAGCA TGGCGGTGAT CTTCATCGAA CAGAAGCCGG TCACCCGCTA CGTGCGTCAG 
ACCGTGGACG GTGTCGAGCA GGAAGTTGCC GTCTCTTCGT TCGTCGAAGA GAAGAAGATC 
ATCAGCCTGG CCACCATTCA GTCGGCACTG GGCAGCCAAT TCCGCATCAC TGGCCTGAAC 
GGCCAGGGTG AGTCCTCGGA ACTGGCGCTG CTGCTGCGCG CTGGTGGTCT GGCCGCGCCA 
ATGTACTTCG CTGAAGAGCG CACCATCGGC CCGAGCCTGG GTGCCGAAAA CATCGCCAAG 
GGTATCGAGT CCACCGAATG GGCGATGATC TTCGTGGCGC TGTTCATCAT CGCCATCTAC 
CGCTTCTTCG GTGTGCTGGC GACCGTGGCG CTGGCCTTCA ATCTGGTGCT GCTGGTGGGG 
CTGATGTCGG CCATTGGCGC GACGCTGACG CTGCCCGGTA TCGCCGGTAT CGTGCTGACC 
CTGGGTATGG CGGTGGATGC CAACGTGCTG ATCTTCTCGC GCATACGCGA GGAACTGGCC 
AACGGGCTGC ACGTGCAGCG TGCCATCCAT GAGGGTTTCG ACCGCGCCTA CTCGGCGATT 
CTCGACAGTA ACCTGACCAC CCTGCTGGTC GGCGGCATCC TGTTCGCCAT GGGGACCGGC 
CCGGTCAAGG GCTTCGCGGT GACCATGTCG CTGGGCATCA TCACGTCGAT GTTCACTGCC 
ATCATGTTCA CCCGTGGTCT GGTCAACCTG ATCTTCGGTG GCCGTAACTT CAAGAAGCTG 
TGGATCTGA 

 

Protein sequence

MLNKYPLWKY LLILAVLAIG LVYSIPNLYP DDPAVQISGA SSALSIEQGD VERASKALQD 
AGIQVKAASL DERGRGGLIR LTKQDDQLPA KDIVRRVLGD DYVVALNLAQ TTPDWLRSLG 
ASPMKLGLDL SGGVHFLLEV DMDKALDVRR KVYEGEIKSL LRKERIRYRS MPEQGGRIQL 
GFADSDTLEK AQRLIRKDYN DFELTTVERG GQQVLQLALT QAKIAEIREY SIRQNLTTVR 
NRVNELGVAE PLVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLQA DLDAPRGATE 
TFGFREEGRP PVQLERELII TGDQVTDAQA SFDENGRPQV NIRLDGHGGD LMNRATRNNV 
GRSMAVIFIE QKPVTRYVRQ TVDGVEQEVA VSSFVEEKKI ISLATIQSAL GSQFRITGLN 
GQGESSELAL LLRAGGLAAP MYFAEERTIG PSLGAENIAK GIESTEWAMI FVALFIIAIY 
RFFGVLATVA LAFNLVLLVG LMSAIGATLT LPGIAGIVLT LGMAVDANVL IFSRIREELA 
NGLHVQRAIH EGFDRAYSAI LDSNLTTLLV GGILFAMGTG PVKGFAVTMS LGIITSMFTA 
IMFTRGLVNL IFGGRNFKKL WI