| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3511 |
|---|
| Symbol | |
|---|
| ID | 5105979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3870624 |
|---|
| End bp | 3871838 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640504763 |
|---|
| Product | cysteine desulfurase |
|---|
| Protein accession | YP_001188991 |
|---|
| Protein GI | 146308526 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS
[TIGR03402] cysteine desulfurase NifS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.309898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC CCATTTACCT CGATTATTCC GCCACCACGC CGGTCGATCC GCGTGTCGCG
CAGAAAATGA GCGAATGCCT GCTGGTCGAC GGTAACTTCG GCAACCCGGC TTCGCGCTCG
CACGTATTCG GCTGGAAGGC CGAGGAAGCG GTGGAAAACG CTCGTCGTCA GGTTGCCGAG
CTGGTCAATG CCGACCCGCG CGAGATCGTC TGGACCAGCG GTGCCACCGA GTCCGACAAC
CTCGCCATCA AGGGCGTGGC GCATTTCTAC GCTAGCAAGG GCAAACACAT CATCACCTCG
AAGATCGAGC ACAAGGCGGT GCTGGACACC ACCCGCCAGC TCGAGCGCGA GGGCTTCGAA
GTTACCTACC TCGAGCCGGG CGAAGATGGC CTGATCACGC CGGCGATGGT CGAAGCCGCG
CTGCGTGACG ACACCACGCT GGTGTCGGTC ATGCACGTCA ACAACGAGAT CGGCACCATC
AACGACATCG CCGCCATCGG CGAGCTGACC CGCTCGCGCG GTGTGCTGCT GCATGTCGAT
GCCGCGCAGT CCACCGGCAA GGTGGAAATC GATCTGGAAA AGATGAAGGT CGACCTGATG
TCCTTCTCCG CGCACAAGAC CTACGGCCCG AAAGGCGTGG GCGCATTGTA CGTGCGCCGC
AAGCCGCGTG TGCGCCTGGA AGCGCAGACC CACGGTGGCG GCCATGAGCG CGGCATGCGC
TCCGGCACCC TGGCCACCCA CCAGTGCGTG GGTATGGGCG AAGCCTTCCG TATCGCCAAG
GAAGACATGG CTGCGGAAAA CCAGCGCATC ACCGCCTTGC GCGACCGCTT CTACCGCCAG
CTCGAAGGCA TGGAAGAGCT GTACGTCAAC GGCAGCCTGA CTGCCCGCGT GCCGCACAAC
CTCAACCTGA GCTTCAACTA TGTCGAGGGC GAGTCGCTGA TCATGGCGCT CAAGGACCTC
GCCGTATCGT CCGGTTCGGC CTGTACCTCG GCCTCCCTGG AGCCGTCCTA CGTACTGCGT
GCGCTGGGCC GCAACGACGA ACTGGCGCAT AGCTCGATTC GCTTCACCTT CGGTCGTTTC
ACCACCGAAG AAGAGGTCGA CTACGCCGCT GCCAAGGTTC GCGAGGCCGT GGACAAGCTG
CGTGAACTGT CGCCCCTGTG GGATATGTTC AAAGAAGGTG TCGACCTTTC CTCCGTGGAA
TGGGCAGCAC ACTGA
|
|---|
| Protein sequence | MKLPIYLDYS ATTPVDPRVA QKMSECLLVD GNFGNPASRS HVFGWKAEEA VENARRQVAE
LVNADPREIV WTSGATESDN LAIKGVAHFY ASKGKHIITS KIEHKAVLDT TRQLEREGFE
VTYLEPGEDG LITPAMVEAA LRDDTTLVSV MHVNNEIGTI NDIAAIGELT RSRGVLLHVD
AAQSTGKVEI DLEKMKVDLM SFSAHKTYGP KGVGALYVRR KPRVRLEAQT HGGGHERGMR
SGTLATHQCV GMGEAFRIAK EDMAAENQRI TALRDRFYRQ LEGMEELYVN GSLTARVPHN
LNLSFNYVEG ESLIMALKDL AVSSGSACTS ASLEPSYVLR ALGRNDELAH SSIRFTFGRF
TTEEEVDYAA AKVREAVDKL RELSPLWDMF KEGVDLSSVE WAAH
|
|---|
| |