Gene Pmen_3503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3503 
Symbol 
ID5105971 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3865092 
End bp3866240 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content61% 
IMG OID640504755 
Productradical SAM protein 
Protein accessionYP_001188983 
Protein GI146308518 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAATA CCACCGGCAA GATCAACCTG CTGGGCCTGA CCCAGCCGGA AATGGAACAG 
TTCTTCGAGT CCATCGGCGA GAAGCGCTTC CGTGCCGGCC AGGTAATGAA GTGGATTCAC
CACTTTGGCG TCGATGATTT CGCCGCCATG ACCAATGTCG GCAAGGCCTT GCGCGAGAAG
CTCGAGGCCT CTGCCGAGAT TCGCGGCCCG GAAGTGGTCA GCGAGAATAT TTCCGCCGAT
GGCACGCGCA AGTGGGTGGT GCGTGTGGCG TCGGGCAGCT GCGTGGAAAC CGTGTACATC
CCGCAGAATG GCCGCGGCAC CCTGTGCGTG TCGTCGCAGG CCGGTTGTGC CCTGGACTGC
AGCTTCTGCT CCACCGGCAA ACAGGGTTTC AACAGCGACC TGACCAGCGC CGAGATCATC
GGCCAGGTGT GGATCGCCAA CAAATCCTTC GGCACCGTGC CGGCGAAGAT CGACCGCGCC
ATCACCAACG TGGTGATGAT GGGCATGGGC GAGCCGCTGC TGAATTTCGA CAACGTCGTC
TCTGCCATGC AGATCATGAT GGACGATCTG GGTTATGGCA TTTCCAAGCG CAAGGTGACC
CTGTCCACCT CCGGCGTGGT GCCGATGATC GACAAGCTGG CCGAAGTCAT CGACGTGTCT
CTGGCCCTGT CGCTGCACGC GCCCAACGAC GAGCTGCGCA ACCAGCTGGT GCCGATCAAC
AAGAAGTATC CGCTGGACAT GCTGCTGGCG GCCTGCAAGC GCTACGTCGC CAAGCTTGGC
GAGAAACGTG TGCTGACCAT CGAGTACACC CTGCTCAAGG GCGTCAACGA TCAGCCCGAG
CACGCTGAGC AGATGATCGC ACTTCTCGCC GATGTGCCTT GCAAGATCAA CCTGATTCCG
TTTAATCCCT TCCCCTTCTC GGGGTACGAG CGGCCGAGCA ATAACGCCAT TCGCCGCTTC
CAGGACCTGT TGCACAAGGC CGGTCATAAC GTCACGGTAC GCACTACGCG GGGTGACGAT
ATCGATGCGG CCTGCGGCCA GTTGGTCGGC CAGGTGATGG ATCGTACCCG GCGTAGTGAA
CGCTACATTG CCGTGCGCCA ACTGGGCAGC GAGGCACAAG AGCCACGCGC TGCCGCTAAC
CGAAATTGA
 
Protein sequence
MTNTTGKINL LGLTQPEMEQ FFESIGEKRF RAGQVMKWIH HFGVDDFAAM TNVGKALREK 
LEASAEIRGP EVVSENISAD GTRKWVVRVA SGSCVETVYI PQNGRGTLCV SSQAGCALDC
SFCSTGKQGF NSDLTSAEII GQVWIANKSF GTVPAKIDRA ITNVVMMGMG EPLLNFDNVV
SAMQIMMDDL GYGISKRKVT LSTSGVVPMI DKLAEVIDVS LALSLHAPND ELRNQLVPIN
KKYPLDMLLA ACKRYVAKLG EKRVLTIEYT LLKGVNDQPE HAEQMIALLA DVPCKINLIP
FNPFPFSGYE RPSNNAIRRF QDLLHKAGHN VTVRTTRGDD IDAACGQLVG QVMDRTRRSE
RYIAVRQLGS EAQEPRAAAN RN