| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3502 |
|---|
| Symbol | |
|---|
| ID | 5105970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3864317 |
|---|
| End bp | 3865078 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640504754 |
|---|
| Product | type IV pilus biogenesis/stability protein PilW |
|---|
| Protein accession | YP_001188982 |
|---|
| Protein GI | 146308517 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCGC GCCCCGCGCT GTTGTTGCTA GTTGTCAGTC TGCTCGGCGG CTGTGTGACT
ACCGGTGACG TTGACCCCAT GCGTACGTCC AAAGGGCGCG ACGAGGCGCG TGATGCCTAT
GTGCAACTCG GCATCGCCTA TATCCAGCAG GGCGATACCC AGCGCGCCAA GGTACCGCTG
AAAAATGCGC TGGAGCTGGA CGCCTCCAAT GCCGATGCGC ATGCTGCCCT GGCCATGGCG
TTCCAGCTGG AGATGGAGCC GAAGCTGGCC GATGAGCATT TCCGCAAGGC ACTGTCCCAG
CGCCCCAAGG ATGCACGCCT GTTGAACAAC TATGCTGGCT TCCTGTTCGA GCAGAAGCGC
TACCAGGACG CCATGAACAC CTACCTCAAG GCCGCCGAGG ACAACCTTTA TCCCGAGCGC
TCCCGAGTCT TCGAGAACCT CGGGCTGACC GCCCTGCAAT TGAAACAGCG TGAGCAGGCC
AAGGAGTACT TCCAGCGCTC GCTGCGCCTG AGCAGCCGCC AGCCGCGGGC GTTGCTGGAG
ATGGCCATGC TGTCCTACGA AGACAAGGAC TATGTGCCCG CCCGTAGTTA TTACGACAGC
TACAGCGAAA TCGCCCCGCA GAACGCGCGC AGCCTGCTGC TCGGCGCACG TCTGGCCGAG
GTGTTCGAGG ATCGTGACAG GGCTGCCAGC CTCGGGCTGC AGCTGCGCCG TCTGTATCCG
GCTTCTCAGG AATATCAGCA ATACGTTTCG GGGCAAAAAT GA
|
|---|
| Protein sequence | MSSRPALLLL VVSLLGGCVT TGDVDPMRTS KGRDEARDAY VQLGIAYIQQ GDTQRAKVPL
KNALELDASN ADAHAALAMA FQLEMEPKLA DEHFRKALSQ RPKDARLLNN YAGFLFEQKR
YQDAMNTYLK AAEDNLYPER SRVFENLGLT ALQLKQREQA KEYFQRSLRL SSRQPRALLE
MAMLSYEDKD YVPARSYYDS YSEIAPQNAR SLLLGARLAE VFEDRDRAAS LGLQLRRLYP
ASQEYQQYVS GQK
|
|---|
| |