Gene Pmen_3501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3501 
Symbol 
ID5105969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3863331 
End bp3864320 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content66% 
IMG OID640504753 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001188981 
Protein GI146308516 
COG category[S] Function unknown 
COG ID[COG1426] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGG CACATAGCGA AGCAGTGACT CAGCCAATGC CGAGCAATCC GGGCGAAAGT 
CTGCGTCAGG CCCGTGAGAT CAAGGGCTGG AGCGTCGCCG AAGTGGCCAT GCAGCTCAAC
CTCACCCCGC AGCGTCTGGC CCAGATCGAA GCAGGCGCTT TCGACAAGCT GCCGGGCACC
ACCTTCGCTC GTGGCTACAT CCGTGCCTAT GCCAAGTTGC TCGAGCTGGA TCAGAACCGC
CTGGTGCTGG AGTTCGATCA GTTCACCGGC ACCGATGCCA CCGGCAGCAA CGTGCATAGC
CTGGGGCGTA TCGAGGAGCC CGTGCGCTAT TCGCAGAGCA TCCTGCGCCT GGTCAGTTTC
CTGCTGTTGC TGGCGCTGAT CGGCGCCGGT TTCCTGTGGT GGCAGGAGCA GGGGCGGTCG
GTAACCAGTC TGGCTGACCT GGGGCTCGAG CATGTGGAAG TGGAGGGTGC CGATGGCACC
ACTCAGGTGC ATTCGCTGGC CGAGCCGGAA GACCAGGCCG TGGTCGCGGC CCAGGGTAAC
GAGTCGGCCA GTCCGCTGTT GCTGCCGATC GAGCCGGGCG AAGCGCCGGA AGCCGTAACC
GAAACCCAGC AGCCCGCCGC AGAAGGCACT GCCGCTGCGC CGACTCCCGC GCCTTCCGCT
GCGCCCGAAG CCACCCAGCC GGATACCGCT GCAGCGCCGC AAGCGCCGGC CGCGCCGGAG
CCCGCTGCAC CCGTCGAGGT CGCGCCAGGG CAGGGCGCCC TGAGCGTACA GTTCACCGCC
GATTGCTGGA CGCAGGTGAC CGATGCCGAT GGCAAGGTGC TGCTCAGCGC GCTCAAGCGC
AGTGGCGAGC GCATCGAATT GACTGGCAAG GCGCCCATGG AATTGCGTCT GGGCTTCGCG
CGCGGCGCTC AGGTCCGCTT CAACGGCGAA AACGTGGATG TCGCGCCGTA CATGACCGGC
GAAACCGCGC GCCTGAAACT GGGGTTGTAA
 
Protein sequence
MKAAHSEAVT QPMPSNPGES LRQAREIKGW SVAEVAMQLN LTPQRLAQIE AGAFDKLPGT 
TFARGYIRAY AKLLELDQNR LVLEFDQFTG TDATGSNVHS LGRIEEPVRY SQSILRLVSF
LLLLALIGAG FLWWQEQGRS VTSLADLGLE HVEVEGADGT TQVHSLAEPE DQAVVAAQGN
ESASPLLLPI EPGEAPEAVT ETQQPAAEGT AAAPTPAPSA APEATQPDTA AAPQAPAAPE
PAAPVEVAPG QGALSVQFTA DCWTQVTDAD GKVLLSALKR SGERIELTGK APMELRLGFA
RGAQVRFNGE NVDVAPYMTG ETARLKLGL