Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3501 |
Symbol | |
ID | 5105969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3863331 |
End bp | 3864320 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640504753 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001188981 |
Protein GI | 146308516 |
COG category | [S] Function unknown |
COG ID | [COG1426] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGCGG CACATAGCGA AGCAGTGACT CAGCCAATGC CGAGCAATCC GGGCGAAAGT CTGCGTCAGG CCCGTGAGAT CAAGGGCTGG AGCGTCGCCG AAGTGGCCAT GCAGCTCAAC CTCACCCCGC AGCGTCTGGC CCAGATCGAA GCAGGCGCTT TCGACAAGCT GCCGGGCACC ACCTTCGCTC GTGGCTACAT CCGTGCCTAT GCCAAGTTGC TCGAGCTGGA TCAGAACCGC CTGGTGCTGG AGTTCGATCA GTTCACCGGC ACCGATGCCA CCGGCAGCAA CGTGCATAGC CTGGGGCGTA TCGAGGAGCC CGTGCGCTAT TCGCAGAGCA TCCTGCGCCT GGTCAGTTTC CTGCTGTTGC TGGCGCTGAT CGGCGCCGGT TTCCTGTGGT GGCAGGAGCA GGGGCGGTCG GTAACCAGTC TGGCTGACCT GGGGCTCGAG CATGTGGAAG TGGAGGGTGC CGATGGCACC ACTCAGGTGC ATTCGCTGGC CGAGCCGGAA GACCAGGCCG TGGTCGCGGC CCAGGGTAAC GAGTCGGCCA GTCCGCTGTT GCTGCCGATC GAGCCGGGCG AAGCGCCGGA AGCCGTAACC GAAACCCAGC AGCCCGCCGC AGAAGGCACT GCCGCTGCGC CGACTCCCGC GCCTTCCGCT GCGCCCGAAG CCACCCAGCC GGATACCGCT GCAGCGCCGC AAGCGCCGGC CGCGCCGGAG CCCGCTGCAC CCGTCGAGGT CGCGCCAGGG CAGGGCGCCC TGAGCGTACA GTTCACCGCC GATTGCTGGA CGCAGGTGAC CGATGCCGAT GGCAAGGTGC TGCTCAGCGC GCTCAAGCGC AGTGGCGAGC GCATCGAATT GACTGGCAAG GCGCCCATGG AATTGCGTCT GGGCTTCGCG CGCGGCGCTC AGGTCCGCTT CAACGGCGAA AACGTGGATG TCGCGCCGTA CATGACCGGC GAAACCGCGC GCCTGAAACT GGGGTTGTAA
|
Protein sequence | MKAAHSEAVT QPMPSNPGES LRQAREIKGW SVAEVAMQLN LTPQRLAQIE AGAFDKLPGT TFARGYIRAY AKLLELDQNR LVLEFDQFTG TDATGSNVHS LGRIEEPVRY SQSILRLVSF LLLLALIGAG FLWWQEQGRS VTSLADLGLE HVEVEGADGT TQVHSLAEPE DQAVVAAQGN ESASPLLLPI EPGEAPEAVT ETQQPAAEGT AAAPTPAPSA APEATQPDTA AAPQAPAAPE PAAPVEVAPG QGALSVQFTA DCWTQVTDAD GKVLLSALKR SGERIELTGK APMELRLGFA RGAQVRFNGE NVDVAPYMTG ETARLKLGL
|
| |