| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3500 |
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| Symbol | ispG |
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| ID | 5105968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3862215 |
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| End bp | 3863327 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504752 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001188980 |
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| Protein GI | 146308515 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTGCG AATCGCCGAT CAAGCGTCGC CTGTCGCGCA AGATCTGGGT TGGCTCGGTA
CCGGTAGGCG GCGATGCGCC GATTGCCGTA CAGAGCATGA CCAACACCGA CACCAACGAT
GTGGCGGCCA CCGTGGCGCA GATCCGTCGC TTGGAAGATG CCGGCGCCGA CATCGTGCGC
GTTTCCGTGC CGGACATGGA TGCCGCCGAG GCCTTCGGCC GCATCAAGCA GCAGGTACGC
GTACCGCTGG TGGCGGATAT TCATTTCGAC TACCAGATCG CCCTGCGCGT GGCCGAGCTG
GGCGTCGACT GCCTGCGCAT CAATCCCGGC AACATCGGCC GTGAGGACCG CGTCAAGGCG
GTGGTCGAGG CCGCACGCGA CAAGGGCATT CCGATCCGCA TCGGGGTCAA CGCCGGGTCC
CTGGAAAAGG ACCTGCAGAA GAAGTACGGC GAGCCGACCC CCGCGGCGCT GGTGGAATCC
GCGCTGCGTC ATGTCGAGCA TCTCGATCGC CTGAACTTCC CGGACTTCAA GGTCAGCGTG
AAGGCCTCCG ACGTGTTCAT GGCCGTCGAG GCCTATCGCC TGCTGGCCAA GCAGATCGAG
CAACCGCTGC ACTTGGGCAT CACCGAGGCC GGTGGCCTGC GCTCCGGTAC CGTGAAGTCC
GCAGTCGGCC TGGGCATGCT GCTGGCCGAG GGGATTGGCG ATACCATCCG CATCTCGCTG
GCCGCCGACC CGGTGGAAGA GATCAAGGTC GGTTTCGACA TTCTCAAATC CCTGCGCCTG
CGTTCGCGTG GCATCAACTT CATCGCCTGC CCGAGCTGCT CGCGGCAGAA CTTCGATGTG
GTCAAGACCA TGAACGAACT GGAGAGCCGC GTCGAGGATC TGCTGGTGCC GCTGGACGTG
GCCGTGATCG GCTGCGTGGT CAACGGTCCC GGCGAAGCCA AGGAAGCGCA CATCGGCCTC
ACCGGTGGTA GCCCGAACAA CCTGGTCTAC ATCGACGGCA AACCGGCCTC GAAGCTGACC
AACGAAAACC TGGTGGACGA GCTGGAGAAG CTCATCCGCG ACAAGGCGGC CGAGAAGGCC
GCCGCCGATG CCGCCGTGAT CGTGCGCAGC TGA
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| Protein sequence | MHCESPIKRR LSRKIWVGSV PVGGDAPIAV QSMTNTDTND VAATVAQIRR LEDAGADIVR
VSVPDMDAAE AFGRIKQQVR VPLVADIHFD YQIALRVAEL GVDCLRINPG NIGREDRVKA
VVEAARDKGI PIRIGVNAGS LEKDLQKKYG EPTPAALVES ALRHVEHLDR LNFPDFKVSV
KASDVFMAVE AYRLLAKQIE QPLHLGITEA GGLRSGTVKS AVGLGMLLAE GIGDTIRISL
AADPVEEIKV GFDILKSLRL RSRGINFIAC PSCSRQNFDV VKTMNELESR VEDLLVPLDV
AVIGCVVNGP GEAKEAHIGL TGGSPNNLVY IDGKPASKLT NENLVDELEK LIRDKAAEKA
AADAAVIVRS
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