| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3489 |
|---|
| Symbol | |
|---|
| ID | 5105957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3849597 |
|---|
| End bp | 3850472 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640504741 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001188969 |
|---|
| Protein GI | 146308504 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTT CACCGGAATC CCTCCAGGCG TTCGCCCAAG CCGCCAACTG CGGCTCGTTG
AGCGCTGCCG CCAGACGCCT GGGCAAGAGC CAATCGACCA TCAGTGAGGC GGTGGGGCGC
CTGGAAATCG ACCTGGGCGT GGCGCTTTTC GAACGCGGCC CACGCAAGCT GCAACTGACC
GAGGCCGGCG CCAGCCTGCT GGCACATGCC GAGGAAGTGC TGTGTGCCAG TGACCGCCTG
GCGCGGCATG CCGCGGCTCT GGCCAGGGGA CAGGAGCCGC GCCTGACCCT GGCGCTGTCC
GATGCCTATC AGCCGAAGCA GTACGAGGCG CGCCTGCAGG AGCTGGATCA GCGGTTCCCC
GATTTGCAGT TCGAGAGCCT GATCGCGGAG CAGGCTGACG TGCTCGACCT GGTCAGTCAG
GGCCGCGCGC AACTCGGTCT GATCGCCGCA CAGCCGGCCT ACCCACCGCA TATCGCCCAT
GCCCGCCTGC ATATGAGCAG CGAATTCGGC CTGTTCGCGG CCAAGGGTCA CCCGCTTAGC
GAACTGGCCC AGGTGCGCCC GGAAGACTTG TCACACTGGC GCCTGCTGCG CCTGAGCAGC
GTCGCCAACG ACGACGCCAG CGCCGATGTT CTACCTGGCA GCGGTGGACG CTGCTGGGCC
GCGCCGGACT ACCTGATGCT GCTGGAGATG GCGCGCCTGG GCTTCGGCTG GGCCGAGCTG
CCGCGGCAAC TGGTCGACGC CTACGGCTTC GATTGCCTGC AGGAGCTGCG CTGCAGTGGC
TGGCCGCGAC GGGTGACGGT GGACGCCGTG TGGTCACGCC AGCGGGAACT CGGCCCGGTG
GCGGCCTGGC TGCTGGAGCG CCTGCTGCAT GCTTGA
|
|---|
| Protein sequence | MNISPESLQA FAQAANCGSL SAAARRLGKS QSTISEAVGR LEIDLGVALF ERGPRKLQLT
EAGASLLAHA EEVLCASDRL ARHAAALARG QEPRLTLALS DAYQPKQYEA RLQELDQRFP
DLQFESLIAE QADVLDLVSQ GRAQLGLIAA QPAYPPHIAH ARLHMSSEFG LFAAKGHPLS
ELAQVRPEDL SHWRLLRLSS VANDDASADV LPGSGGRCWA APDYLMLLEM ARLGFGWAEL
PRQLVDAYGF DCLQELRCSG WPRRVTVDAV WSRQRELGPV AAWLLERLLH A
|
|---|
| |