| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3474 |
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| Symbol | |
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| ID | 5105944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3831656 |
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| End bp | 3834553 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504728 |
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| Product | aminomethyltransferase |
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| Protein accession | YP_001188956 |
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| Protein GI | 146308491 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCC TCCCAGCCCC CATGGGCCTG CTGATCGACC GCGATCAGCC ACTGCGTTTC
AGCTTCGACG GCACCGATTA CCAGGGTCTT GCTGGCGACA GCATCGCCAG CGCGCTGCTC
GCCAACGGCC GCTGGTTGCT CTCGCGCTCG TTCAAGTACC ACCGCCCGCG CGGCCCGTTG
AGCATGGCCG GGCAGGACGC CAACACCCTG GTGCAGTTGC CTGACGAGCC CAATGTGCTG
GCCGACACCC AGGCGCTCCA AGCCGGGCTC GCCGTCACCG GGCAGAACTT CAACGGCTCG
CTGGACAACG ACCGCGACGC CTACCTGGGC AAGTTCTCCA AATTCATGCC GGTGGGTTTC
TACTACCGCT CGTTCTACAA GCCCAAGGGC ATATGGAAGG TGTGGGAGCC GCTGATCCGC
AAGAAGGCCG GCCTCGGCGT GCTCGATCTG AACTTCAAGC CGCAGTACTA CGACAAGGCC
TACCTGTTCG TCGACGTCGC CATCGTCGGC GCCGGCCCGG CCGGGCTGTC CGCCGCGCTG
ACCGCCGCCA ATGCCGGGGC CAAAGTGCTG CTGATAGAAC AGCAGCCGCT GCTCGGCGGC
TCGCTGACCT ACGCCCGTTT CGATATCGAG GGCCGCCGCG CCGAGGCGCT GCGCCGTGAT
CTGGTGAGCG CCGTGCAAGG CCACACCAAT ATCCAGGTAC TGACGCAGGC CACCTGCAAC
GCCTGGTTCA CCGACAACTA CCTGCCGGTG ATCCAGAGCC GACGGATGTA CAAGGTGCGT
GCGCGGCAGT GCATCGTCAG CGCCGGCTCC TTCGACCAGC CGGTGGTGTT TCGCAACAAC
GACCTGCCCG GGGTCATGCT CACCAGCGCC GCCCAGCGCC TGATGAAGCT CTACGCGGTC
AAGCCCGGCC AGCGCGCCGT GCTGCTCACC GGCAACGACG ACGGCTACCT GGCCGCCCTC
GACCTGGCCG AACAGGGCGT GCAGGTCGCT GCCCTGGTGG ACATGCGCTT GCAGCCGGCC
GATGTCGCGC TGAAGGTCGC CGTGGAAAAG CAGGGCATCC CCTGCCACCT GGGCAGCACC
GTGTACGAGG CCCTGCACGA GAAGGGTATG CGCCATGTCA GCGGCGCGGA TATCCGCCGC
ATCACCGCCC AGGGCCAGGT TGCCGCCCAG GGAGTTCACG TCGACTGCGA CCTGCTGTGC
ATGTCCGCCG GCTACATGCC GGTCTACCAG CTGCTGTGCC AAGCAGGCGG CAAGCTGGCC
TACGACGAGC AGCGCGCCGA GTTCGCCATC AGTGGCCTGC CGGAAGGGTT GGCGATCGCC
GGTTCGGTCG GCGGTCGCCA CCATCTGGAC AACGTACTCG CCGACGGCGC CCGCGCCGCC
GCACGGGCAG TCGAAGCACT GGGCCTGGAT GCCGGCATTG GCGAAGCGAG CCTGCGCGGC
GAGGCGCGGG TCAACTTCGA GTGGCCGATA TTCCCCCATC CCAAGGGCAA GGATTTCGTC
GACTTCGACG AAGACCTGCA GGTTCGCGAC ATCGTCAACG CCACCCGCAT CGGCTACCGC
GACGTGCAAC TGGTCAAGCG CTTTTCCACC GTCGGCATGG GCCCGTCCCA GGGCCGCCAC
TCGGCGCTGC CCACCGCGCG CCTGGTAGCC CAGGCCACCG GCCGCAGTAT CGGCGAAACC
GGCGTGACCA CCGCGCGGCC GCCGTTCGAA GCAGAAAAAC TGGCCCACGT CGCCGGCCGC
GCCTTCGACC CCTATCGTCA CACCGCCATG CACAGCCGCC ATGTCGCCGC CGGCGCCAAG
CTGATGCCCG CCGGTATCTG GCAGCGTCCA GCGTTCTACG GCAAGGCCGA AGATCGCGAA
CGCTGCATGC AGGAAGAAGC CCGCCACGTG CGCGAGAAGG TCGGCCTGAT CGACGTGTCC
ACCCTCGGCG GCCTCGACGT GCGCGGCCCG GATGCCGCCG AGTTGCTCGA GCGCATCTAC
ACCCTGCCAT TCAAAAAGCA GCCGCTGCTG CGCACTCGCT ATGCGTTGAT GACCAACGAG
CACGGCGTGG TGATCGACGA CGGCGTCTGC GCGCGGCTGG CGGACAATCA CTTCTACGTC
ACCGCCACCA CCAGCGGCGT CGACCGCATC TACCAGCAGA TGCTCAAGTG GAACGCGCAG
TGGCGGCTGA ACGTGGACAT CACCAACGTC ACAGCCGCCC TGGCGGCGGT CAACCTGGCC
GGGCCACTGT CGCGCCAGGT GCTGCAGAAG CTCTGCGCGG ACGTCGACCT GTCCGCCGAG
GGCTTCCCCT ATCTGGCCGC ACGCACCGGC AGCGTCGCCG GCATACCGGC GCGGCTGATG
CGGGTCGGTT TCGTCGGTGA GCTGGGCTAT GAAATCCACG TACCGGCACG TCATGGGGCA
CGGCTGTGGG ACGCATTAAT GGAGGCCGGC GCAGAGTTCG GTATCCGCCC CTTCGGCGTC
GAGACCCAAC GCCTGCTGCG CCTGGAGAAA GGCCACGTGA TCATCAGCCA GGACACAGAT
GGTATGACCC ATCCCGGCGA GATCGACATG CAGTGGGCCA TCGGCCGCAA GAAACCGTTC
TTCGTCGGCA AGCGCTCGAT CGAAATCCTC GAAGCGCAGC CGCTCAAGCG CAAGCTGGTC
GGTTTCACCC TGCCCAAGGG CAGTGCGCAG CCGCTGGAGG GTCACCTGGT GCTCAATGGG
CCCGACATCA GCGGCAACGT CACCTCTTGC GAGTATTCGG CGACCCTCGG CCAGATCATC
GGCCTGGCCT ACGCCGGCGC CGACCAGGCC GAGCCAGGCA TGCGGATTCC GATCCGAGTC
GATGGCGGCC AGGTGGTGCA GGCCACGGTG GTGCAACTGC CCTTCTTCGA TCCCGACAAC
CAGCGCCAGG AGCTCTGA
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| Protein sequence | MNRLPAPMGL LIDRDQPLRF SFDGTDYQGL AGDSIASALL ANGRWLLSRS FKYHRPRGPL
SMAGQDANTL VQLPDEPNVL ADTQALQAGL AVTGQNFNGS LDNDRDAYLG KFSKFMPVGF
YYRSFYKPKG IWKVWEPLIR KKAGLGVLDL NFKPQYYDKA YLFVDVAIVG AGPAGLSAAL
TAANAGAKVL LIEQQPLLGG SLTYARFDIE GRRAEALRRD LVSAVQGHTN IQVLTQATCN
AWFTDNYLPV IQSRRMYKVR ARQCIVSAGS FDQPVVFRNN DLPGVMLTSA AQRLMKLYAV
KPGQRAVLLT GNDDGYLAAL DLAEQGVQVA ALVDMRLQPA DVALKVAVEK QGIPCHLGST
VYEALHEKGM RHVSGADIRR ITAQGQVAAQ GVHVDCDLLC MSAGYMPVYQ LLCQAGGKLA
YDEQRAEFAI SGLPEGLAIA GSVGGRHHLD NVLADGARAA ARAVEALGLD AGIGEASLRG
EARVNFEWPI FPHPKGKDFV DFDEDLQVRD IVNATRIGYR DVQLVKRFST VGMGPSQGRH
SALPTARLVA QATGRSIGET GVTTARPPFE AEKLAHVAGR AFDPYRHTAM HSRHVAAGAK
LMPAGIWQRP AFYGKAEDRE RCMQEEARHV REKVGLIDVS TLGGLDVRGP DAAELLERIY
TLPFKKQPLL RTRYALMTNE HGVVIDDGVC ARLADNHFYV TATTSGVDRI YQQMLKWNAQ
WRLNVDITNV TAALAAVNLA GPLSRQVLQK LCADVDLSAE GFPYLAARTG SVAGIPARLM
RVGFVGELGY EIHVPARHGA RLWDALMEAG AEFGIRPFGV ETQRLLRLEK GHVIISQDTD
GMTHPGEIDM QWAIGRKKPF FVGKRSIEIL EAQPLKRKLV GFTLPKGSAQ PLEGHLVLNG
PDISGNVTSC EYSATLGQII GLAYAGADQA EPGMRIPIRV DGGQVVQATV VQLPFFDPDN
QRQEL
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