| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3472 |
|---|
| Symbol | |
|---|
| ID | 5105942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3830104 |
|---|
| End bp | 3831345 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504726 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001188954 |
|---|
| Protein GI | 146308489 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTCA ATCTCCTGAA ATACGGCCTG AGTTCGGAAT ACCCGGTGGA AGTCGACCTG
CCGCCGCCGC GCGAACTCAA GACGTCCTAC GACGTGGTGA TCATCGGCGG CGGCGGCCAC
GGCCTGGCCA TCGCCTACTA CCTGGCCAAG TACCACGGCA TCACCAATGT CGCGGTGCTG
GAAAAGAGCT ACCTCGGCGG CGGCAATACC GCGCGCAACA CCGCTGTGAT TCGTTCCAAC
TACCTCACCA GCGAAGGCGT GCGCTTCTAC GCCGAGTCGG TGCGACTGTT CAAGGAGCTG
TCCAACGAGT TCGACTTCAA CATCATGTAT TCCGAGCGCG GCCAGCTCAC CCTGGCCCAC
ACGGACGCCA CGGTGCGCGC CTTCCGTCAG CGCGCCGAGG TGAACAAACA CTTCGGCGGA
CGCACCGAGA TGATCGACCG CCAACAGATC CGCGAACTGG TGCCGAGCCT CAACCTCGAC
CCCGGCCACC TGCCGGTGCT CGCCGGCCTC TGGCATATCG ACGGCGCCAC CGCGCGCCAC
GACGCCGTGG CCTGGGGCTA CGCCAAACAG GCGGCCAAGC GCGGCGTGGA AATCCACCAG
CTCACCGAGG TGCAGGATCT GGTGATCGAA AACGGCCGCA TCACCGCGGT AAAGACCAAC
CGCGGCATAG TGAGGTGCGG CTGCGCGGTG CAGGCCATCG CCGGCGCCAG CTCGCTGATG
CTGGCCAAGG CCGGCATTCG CGCGCCGATC CACACCTACC CGCTGCAGGC CATGGTGACC
CAGCCGTTCA AGCCCTTCCT CGATCCGCTG GTGAGTTCCT CCGCGCTGCA CTGCTACGTG
CAGCAGACCA GCCGCGGCGA GATCGTCTTC GGCGGCGGCT CCGACCCCTA TCCGCTGTAC
AACACCCGCT CGACCCTGGA TCTGAAGGAG AGCCTGCTGG CCCATGCCAT CGAGATGTTC
CCCTTCATGG CCAACGCCAA ACTGATGCGC CAGTGGGCCG GCATTACCGA CATGACTCCG
GACTACAGCC CGATCATGGG ACTGTCGCCG GTGCAGAACT ATTACCTCGA CGCCGGCTGG
GGCACCTGGG GCTTCAAGTC CACGCCCATC TGCGGCAAGA CCATGGCCGA GTTGGTGGCC
GCAGGCGGCA AGGTGCCGGA GCTTATCCGG CCCTTCGCCC TGGAGCGTTT TTCCACCTTC
CAGCAGGTCA ACGAAATGGG CGCCACGGCG GCCAGCCACT AA
|
|---|
| Protein sequence | MPFNLLKYGL SSEYPVEVDL PPPRELKTSY DVVIIGGGGH GLAIAYYLAK YHGITNVAVL
EKSYLGGGNT ARNTAVIRSN YLTSEGVRFY AESVRLFKEL SNEFDFNIMY SERGQLTLAH
TDATVRAFRQ RAEVNKHFGG RTEMIDRQQI RELVPSLNLD PGHLPVLAGL WHIDGATARH
DAVAWGYAKQ AAKRGVEIHQ LTEVQDLVIE NGRITAVKTN RGIVRCGCAV QAIAGASSLM
LAKAGIRAPI HTYPLQAMVT QPFKPFLDPL VSSSALHCYV QQTSRGEIVF GGGSDPYPLY
NTRSTLDLKE SLLAHAIEMF PFMANAKLMR QWAGITDMTP DYSPIMGLSP VQNYYLDAGW
GTWGFKSTPI CGKTMAELVA AGGKVPELIR PFALERFSTF QQVNEMGATA ASH
|
|---|
| |