Gene Pmen_3446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3446 
Symbol 
ID5105916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand+ 
Start bp3802276 
End bp3803385 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content67% 
IMG OID640504700 
Productbifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 
Protein accessionYP_001188928 
Protein GI146308463 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.834491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATTCA ACCCCATCGA AGAAATCATC GAAGACTTCC GCCAAGGCAA GATGGTGCTG 
CTGGTCGACG ACGAGGATCG CGAGAACGAA GGCGATCTGC TGCTGGCGGC CGAGAAATGC 
ACGCCTGAAG CGATCAACTT CATGGCGCGC GAGGCGCGCG GCCTGATCTG CCTGACCCTG 
ACCGACGAAC ACTGCCAGCG CCTGGGTCTG GAGCAGATGG TGCCGGCCAA CGGCAGCGCC 
TTCGCCACCG CCTTCACCGT CTCCATCGAG GCGGCGCAGG GGGTGACCAC CGGTATCTCC 
GCCGCCGACC GCTGCCTCAC CGTGCTCACC GCCGTGGCGC CCGAAGCCTG CGCGGACGAC 
CTGGTCCAGC CGGGCCATAT CTTCCCCCTG CGCGCCCGTG AGGGCGGCGT GCTGACCCGC 
GCCGGCCACA CCGAGGCCGG CTGCGACCTG GCGCGCCTGG CCGGGCTGAG CCCGGCGGCG 
GTGATAGTCG AGGTGATGAA CGAAGACGGC AGCATGGCCC GCCGTCCCGA TCTGGAAACC 
TTCGCCGAGA AGCACGGCAT CAAGATCGGC ACCATCGCCG ACCTCATCCA TTACCGCCTG 
AGCACCGAGC ACACCGTCAG CCGCATCGGC GAACGCGAAC TGCCCACGGT GCATGGCACC 
TTTCGCCTGG TGACCTACGA GGACCGCATC GAAGGCGGCG TGCATATGGC CATGGTGATG 
GGCGACATCC GCCGCGACGA GGCCACCCTG GTGCGCGTGC ATGTGATCGA CCCGCTGCGC 
GACCTGGTTG GTGCCGAGTA CAACGGCCCG CAGAACTGGA CGCTGTGGGC GGCCCTGCAG 
AAGGTGGCCG AGGCCGGCCA CGGGGTTGTC GTGGTGCTGG CCAACAACGA ATCGTCGCAG 
GCGCTGCTCG AGCGCGTACC GCAACTGACC CAAGCACGTC GGCAGTTCAG CCGTTCGCAG 
TCGCGCATCT ACTCCGAAGT GGGCACCGGC GCGCAGATCC TCCAGGACCT GGGTGTGGGC 
AAGCTGCGCC ACCTCGGCCC GCCGCTCAAA TATGCCGGCC TGACGGGCTA TGACCTGGAA 
GTTGTGGAAA GCATCCCCTT CCAGGGATGA
 
Protein sequence
MPFNPIEEII EDFRQGKMVL LVDDEDRENE GDLLLAAEKC TPEAINFMAR EARGLICLTL 
TDEHCQRLGL EQMVPANGSA FATAFTVSIE AAQGVTTGIS AADRCLTVLT AVAPEACADD 
LVQPGHIFPL RAREGGVLTR AGHTEAGCDL ARLAGLSPAA VIVEVMNEDG SMARRPDLET 
FAEKHGIKIG TIADLIHYRL STEHTVSRIG ERELPTVHGT FRLVTYEDRI EGGVHMAMVM 
GDIRRDEATL VRVHVIDPLR DLVGAEYNGP QNWTLWAALQ KVAEAGHGVV VVLANNESSQ 
ALLERVPQLT QARRQFSRSQ SRIYSEVGTG AQILQDLGVG KLRHLGPPLK YAGLTGYDLE 
VVESIPFQG