| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3415 |
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| Symbol | |
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| ID | 5105887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3770282 |
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| End bp | 3771748 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504671 |
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| Product | putative transglycosylase |
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| Protein accession | YP_001188899 |
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| Protein GI | 146308434 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGCAC GACCTGCGAT ACGCATGCGT TGCGCCACAG GGCTGTTGGC GATTGGAACC
CTCCTGATGC TCGCTGGCTG TGGCGAAGAA CCCAAGCCCA GCGTACTCGA GCAGGTAAAG
GCGGAGGGTG AGCTGCGCGT GGTCACTCGT AACAGCCCCG CCACCTACTT CCAGGACCGC
AACGGTGCCA CCGGTTTCGA ATACGAACTG GCCAAGCGTT TCGCCACCGA CCTCGGTCTG
GAACTGAAGA TCGAAACCGC CGACAACCTC GACAGCCTGT TTGCCAGCCT GGGCCACGTC
GACGGCCCGG TGCTGGCCGC TGCCGGGCTG GTCGAGACAC CGCAGCGCCA GCGCCAGGCA
CGTTTCTCCG TTCCCTATCT GGAAGTCACC CCGCAGATCA TCTATCGCCA GGGCGAGACG
CGCCCGACCA AGGCGGAGGA TCTGCTCGGC AAGCGCATCC TGGTGCTGGC CGGCAGCAGC
CATGCCGAAC AGCTGGAAGC CCTGAAGCTG GAGCTGCCCG AGCTGACGTT CGAGGTCTCC
GATGCCGTGG AGGTGGTCGA CCTGCTGCGC ATGGTCGACG AAGGACAGAT CGACCTGACC
CTGGTGGACT CCAACGAACT GGCGATGAAC CAGGTCTACT TCCCCAACGT GCGCGTGGCC
TTCGACCTGG GTGACACCAA CACCATGCGC TGGGCGGTGG CCCCCGGCGA AGACGACAGC
CTGCTGCTGG AAATCGATGC CTTTCTCGAG CGCTCCCAGG CCAACGGCAC CCTGCAACGC
CTGAAGGAGC GTTACTACGG CCATGTCGAC GTACTCGGTT ACGTCGGTGC CTACACCTTC
GCCCAGCACC TGCAGCAGCG CCTGCCGCGC TACGAGAAGA TGTTCCGCCA GGCCGGCCAC
GCCAATCAGA TTGACTGGCG TCTGCTGGCC GCCATGGGCT ATCAGGAATC GCTGTGGCAA
CCCAACGCCA CCTCCAAGAC CGGCGTACGC GGCCTGATGA TGCTGACCCA GCGCACCGCG
CAATCGGTGG GGGTTTCCAA TCGACTGGAC CCCAAGCAGA GCATCGACGG CGGCGCCCGC
TACTTCGTGC AGATTCACCA GCAATTGCCG GAAAGCATCC AGGAGCCGGA CCGCACCTGG
TTCGCCCTGG CGGCCTACAA CGTCGGCGGC GGCCACCTCG AAGATGCGCG CAAGCTGACC
GAAGCCGAGG GGCTGGACCC CAACAAGTGG ATGGATGTGC AGAAGATCCT GCCACGCCTG
GCGCAGAAGC AGTGGTACAG CAAGACGCGT TACGGCTATG CCCGCGGCGG CGAACCGGTG
CATTTCGTGC GTAACGTACG GCGCTACTAC GACATCCTCA CCTGGGTGAC CCAGCCGCAG
CTGGAGGGCA CCCAGGTCGC CGAGAACGGC ATCCACCTGC CCGGCATCGA CAAGCGCACG
CTGGACGAAC AGACCCCGCC GCTCTGA
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| Protein sequence | MFARPAIRMR CATGLLAIGT LLMLAGCGEE PKPSVLEQVK AEGELRVVTR NSPATYFQDR
NGATGFEYEL AKRFATDLGL ELKIETADNL DSLFASLGHV DGPVLAAAGL VETPQRQRQA
RFSVPYLEVT PQIIYRQGET RPTKAEDLLG KRILVLAGSS HAEQLEALKL ELPELTFEVS
DAVEVVDLLR MVDEGQIDLT LVDSNELAMN QVYFPNVRVA FDLGDTNTMR WAVAPGEDDS
LLLEIDAFLE RSQANGTLQR LKERYYGHVD VLGYVGAYTF AQHLQQRLPR YEKMFRQAGH
ANQIDWRLLA AMGYQESLWQ PNATSKTGVR GLMMLTQRTA QSVGVSNRLD PKQSIDGGAR
YFVQIHQQLP ESIQEPDRTW FALAAYNVGG GHLEDARKLT EAEGLDPNKW MDVQKILPRL
AQKQWYSKTR YGYARGGEPV HFVRNVRRYY DILTWVTQPQ LEGTQVAENG IHLPGIDKRT
LDEQTPPL
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