| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3400 |
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| Symbol | rimM |
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| ID | 5105872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3756002 |
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| End bp | 3756538 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640504656 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_001188884 |
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| Protein GI | 146308419 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.80773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTACGA CGCCGGCCGT CGCCGAGGAT TTGATCGTTC TCGGCAAGAT TGTTTCGGTG
CACGGCGTCA GGGGTGAAGT GAAGGTGTAT TCCTTTACCG ACCCCATCGA TAACGTGCTC
GACTACCGCC ACTGGACGCT CAGGCGTGAC GGTGAGGTAA AGAAAGTGGA ACTGGCCAGC
GGCCGCCTGC AAGGCAAGGT GCTGGTAGCC AAGTTGAAAG GTCTGGATGA TCGCGAAATT
GCGCGTACCT ACGCCGGTTT CGAGATCTGC GTGCCGCGCA GCGAGCTGCC GGACCTGGAA
GAGGGCGAGT TCTACTGGTA CCAGTTGCAG GGCTTGAAGG TCATCGATCA GGCGGGGCAG
TTGCTCGGTG TGGTCGACCA TCTGTTCGAG ACCGGTGCCA ACGATGTGAT GGTGGTCAAG
GCTTGCGCAG GCAGCCTGGA TGATCGCGAG CGTTTGCTGC CCTACACGGA TCAGTGCGTG
CTTTCGATCG ATCTGGCAGC TGGCGAGATG CGGGTCGACT GGGATGCGGA TTTCTAA
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| Protein sequence | MSTTPAVAED LIVLGKIVSV HGVRGEVKVY SFTDPIDNVL DYRHWTLRRD GEVKKVELAS
GRLQGKVLVA KLKGLDDREI ARTYAGFEIC VPRSELPDLE EGEFYWYQLQ GLKVIDQAGQ
LLGVVDHLFE TGANDVMVVK ACAGSLDDRE RLLPYTDQCV LSIDLAAGEM RVDWDADF
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