| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3396 |
|---|
| Symbol | xerD |
|---|
| ID | 5105868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3752977 |
|---|
| End bp | 3753873 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504652 |
|---|
| Product | site-specific tyrosine recombinase XerD |
|---|
| Protein accession | YP_001188880 |
|---|
| Protein GI | 146308415 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTC TGTCCCATCC CATGATCGAG CGATTTCTCG AGACGCTCTG GCTCGAGAAG
GGCCTGTCCG CTCATACCCG TGCCGCCTAT CGCAGCGATC TGGAGCACTT CAACCATTGG
CTCGATGGTC GCGGTCTGCA GCTGCAGTGC ATCGGGCGTG ATGCCATTCT CGATCACCTG
GCCTGGCGCC TGGAGCAGGG CTATCAGGCG CGCTCCACGG CAAGGTTTCT CTCTGGCGTG
CGCGGCTTCT ATCGCTTTCT GCTGCGCGAA GGGGTTGTCG AAGAGGATCC CAGTCTGCAG
GTGGAGCTGC CGCAGATCGG CAGGCCGCTG CCCAAATCGC TGTCCGAGGC GGATGTCGAG
GCGCTGCTGC AGGCTCCGGA TCTGGACGAT CCCATAGGTC TGCGCGATCG CGCCATGCTC
GAGGTGCTCT ATGCCTGCGG GCTGCGCGTC AGCGAACTGG TCGGCTTGAC TCTGGAGCAG
GTCAACCTGC GCCAGGGCGT CCTGCGTGTG TTTGGCAAGG GCAGCAAGGA GCGGCTGGTG
CCGCTGGGCG AGGAGGCCAT CGCCTGGATC GAGCGCTACA GTCGCGAGGC GCGGCCGCTG
CTGCTGGGTG GCAAGCCGAG CGACGTCCTG TTTCCCAGCC TGCGTGGCGA GCAGATGACC
CGGCAGACCT TCTGGCATCG GATCAAACAT CAGGCGAAAG TGGCCGGCAT CGGCAAGTCC
CTGTCGCCGC ATACCCTGCG TCATGCCTTC GCTACCCATC TGCTCAATCA CGGCGCCGAC
CTGCGCGTGG TGCAGATGCT GCTGGGCCAC AGCGACCTGT CCACCACGCA GATCTACACC
CATATCGCTC GGGCGAGGTT GCAGGAGCTG CATGCCAAGC ACCATCCGCG CGGTTGA
|
|---|
| Protein sequence | MSTLSHPMIE RFLETLWLEK GLSAHTRAAY RSDLEHFNHW LDGRGLQLQC IGRDAILDHL
AWRLEQGYQA RSTARFLSGV RGFYRFLLRE GVVEEDPSLQ VELPQIGRPL PKSLSEADVE
ALLQAPDLDD PIGLRDRAML EVLYACGLRV SELVGLTLEQ VNLRQGVLRV FGKGSKERLV
PLGEEAIAWI ERYSREARPL LLGGKPSDVL FPSLRGEQMT RQTFWHRIKH QAKVAGIGKS
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HIARARLQEL HAKHHPRG
|
|---|
| |