| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3370 |
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| Symbol | lysS |
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| ID | 5105842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3718517 |
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| End bp | 3720034 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504626 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001188854 |
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| Protein GI | 146308389 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.234173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACC AACAACTCGA CCAGCCCAGC CTCAGCCACG AAGAGCGTCA GCACGAAGAA
AACAAGCTGA TCGCCCAGCG CAAGGAAAAG CTTGCCGCCG TGCGTGAGCA GGGCATTGCC
TTCCCCAACG ATTTCCGTCG CGACAGCCTG TGCGGCGAGC TGCAGAAACA GTACGAGGGC
AAGAGCAAGG AAGAGCTGGA GGCCGCTGCC ATCCCGGTCA AGATCGCCGG ACGCATCATG
CTCAACCGCG GCGCCTTCAT GGTCCTGCAG GACACCTCCG GGCGCCTGCA GGTGTACGTT
GACCGCAAGG GCCTGCCGGC CGAAACCCTG GAAGCGATCA AGACCTGGGA CCTGGGCGAC
ATCATCGCCG CCGAAGGCAC CCTGGCGCGT TCCGGCAAGG GCGACCTGTA CGTGAACATG
ACCAGCGTGC GCCTGCTGAC CAAGTCGCTG CGCCCGCTGC CGGACAAGCA CCACGGCCTG
ACCGACACCG AGCAGCGCTA CCGTCAGCGT TACGTCGACC TGATCGTCAA CGAGGAAACC
CGCCACACCT TCCGCGTACG TTCGCAGGTG ATCGCGCACA TCCGCCGTTT CCTCAACGAG
CGCGGCTTCC TCGAAGTGGA AACCCCGATG CTGCAGACCA TTCCCGGCGG CGCGGCGGCC
AAGCCCTTCG AGACCCATCA CAACGCCTTG GACATGCAGA TGTTCCTGCG CATCGCCCCG
GAGCTGTACC TCAAGCGGCT TGTTGTTGGT GGTTTTGAAA AAGTGTTCGA GATCAACCGC
AACTTCCGTA ACGAAGGCGT CTCGACCCGG CACAACCCCG AGTTCACCAT GCTCGAGTTC
TACCAGGCCT ACGCCGACTA CCGCGACAAC ATGGACCTGA CCGAGGAGCT GTTCCGCGAG
CTGGCCCTGG CGGTGCTGGG CACCACCGAC GTGCCCTACG GCGACAAGGT GTTCCATTTC
GGCGAGCCCT TCGTGCGCCT GTCGGTGTAC GACTCCATCC TCAAGTACAA CCCGGACATC
ACCGAGGCTG ACCTCAATGA CGTCGACAAG GCCCGCGCCA TCGCCAAGAA GGCCGGCGCC
AAGGTGCTCG GCCACGAAGG CCTGGGCAAG CTGCAGGTGA TGATTTTCGA GGAGCTGGTG
GAGAGCAAGC TGGAGCAGCC GCACTTCATC ACCGAGTACC CCTTCGAGGT CTCGCCGCTG
GCCCGTCGCA ACGACCAGAA CCCCGCCGTC ACCGACCGCT TCGAGCTGTT CATCGGCGGC
CGCGAGATCG CCAACGCCTA TTCCGAGCTC AATGACGCCG AGGACCAGGC CGAGCGTTTC
CACGCCCAGG TGGCCGAGAA GGACGCCGGC GACGACGAGG CCATGCACTT CGACGCCGAC
TTCGTGCGCG CCCTGGAATA CGGCATGCCG CCCACCGCAG GTGAAGGCAT CGGCATCGAC
CGTCTGGTGA TGCTGCTGAC CAACTCGCCG TCGATCCGCG ACGTCATCCT GTTCCCGCAC
ATGCGTCCGC AGGCCTGA
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| Protein sequence | MSDQQLDQPS LSHEERQHEE NKLIAQRKEK LAAVREQGIA FPNDFRRDSL CGELQKQYEG
KSKEELEAAA IPVKIAGRIM LNRGAFMVLQ DTSGRLQVYV DRKGLPAETL EAIKTWDLGD
IIAAEGTLAR SGKGDLYVNM TSVRLLTKSL RPLPDKHHGL TDTEQRYRQR YVDLIVNEET
RHTFRVRSQV IAHIRRFLNE RGFLEVETPM LQTIPGGAAA KPFETHHNAL DMQMFLRIAP
ELYLKRLVVG GFEKVFEINR NFRNEGVSTR HNPEFTMLEF YQAYADYRDN MDLTEELFRE
LALAVLGTTD VPYGDKVFHF GEPFVRLSVY DSILKYNPDI TEADLNDVDK ARAIAKKAGA
KVLGHEGLGK LQVMIFEELV ESKLEQPHFI TEYPFEVSPL ARRNDQNPAV TDRFELFIGG
REIANAYSEL NDAEDQAERF HAQVAEKDAG DDEAMHFDAD FVRALEYGMP PTAGEGIGID
RLVMLLTNSP SIRDVILFPH MRPQA
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