| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3354 |
|---|
| Symbol | |
|---|
| ID | 5105826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3704089 |
|---|
| End bp | 3704790 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640504610 |
|---|
| Product | extensin family protein |
|---|
| Protein accession | YP_001188838 |
|---|
| Protein GI | 146308373 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.177963 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATAC GGATATTCGG CCGCTTGCTC TTGCTCGCCG TGCTGCTCGG CGCGGCTCTG
CTGGTTGCGC TGTGGCGCGG CTGGGTGGAT GTGGCGCCAC GTTTCAATCC CTGGGCGCCG
CTGGACGTGC GCGAGCAGCC GAACCTGCTG ACCGGCTTCA AGCTCTGGCG CCTGAGCGAG
GATCGCGAGT TGTGCGACCT GGCCCTGGCG ACTTCCGAGC TGCGTTTCAC CCGTCTTCCC
GACAGCACGC CGCATCCCGG CTGCCCGATA GAAAATGCCG TGCGTATCCA GGGCGCCAAC
GTCGGCCTGA GCAGCAGCTT CATGGCCACC TGTCCGCTGG CGGTAAGTTT CGCCCTGTTC
GAACGGCATG GGCTGCAGCC CGCTGCGCAG GCGGTGTTCG GCCAGCCGGT CAGCCGCATC
GAGCACGTCG GCAGCTTCGC CTGCCGCAGC ATTGCCGGCA GCCAGCGACC CAGCCAGCAT
TCCTATGCCA ATGCCCTGGA TATGGTCGGC TTCCGGCTGC GCGACGGACG GCGCATCAGC
GTGCTGCACG ACTGGCCGGG AGAGGGCGAC AAGGCGCGCT TCCTGCGCCT GGTGCAGGAG
GCGGCCTGCG ACAGTTTCAA CGTGACCCTG GGGCCGGACT ACAACGCCGC CCACCGCGAC
CACTTTCACG TGGACATGGG CATGTGGCGC ATGTGCCGTT AA
|
|---|
| Protein sequence | MLIRIFGRLL LLAVLLGAAL LVALWRGWVD VAPRFNPWAP LDVREQPNLL TGFKLWRLSE
DRELCDLALA TSELRFTRLP DSTPHPGCPI ENAVRIQGAN VGLSSSFMAT CPLAVSFALF
ERHGLQPAAQ AVFGQPVSRI EHVGSFACRS IAGSQRPSQH SYANALDMVG FRLRDGRRIS
VLHDWPGEGD KARFLRLVQE AACDSFNVTL GPDYNAAHRD HFHVDMGMWR MCR
|
|---|
| |