Gene Pmen_3343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3343 
Symbol 
ID5105815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3690611 
End bp3691717 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content65% 
IMG OID640504599 
ProductABC transporter related 
Protein accessionYP_001188827 
Protein GI146308362 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.328665 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAC CGTTGCTGCA ACTGCGCGGG CTGAATTGCG GCTACCACGC GCACAAGGTG 
GTGCAGGACC TCGACCTGCA TCTGAACGCA GGCGACATCG GCTGCCTGCT GGGCCCCTCG
GGCTGCGGCA AGACCACCAC CCTGCGCGCC ATCGCCGGTT TCGAGCCGGT GCTCGAAGGC
GAGATCGAAC TGGCAGGCGA AGTGATTTCC CGCGCCGGTT TTACCCTGGC TCCGGAGAAG
CGTCACATCG GCATGGTGTT TCAGGACTAC GCCCTGTTTC CCCACCTGAG CGTGGCCGAG
AACATCGCCT TCGGCATTCG CAAACAACCC AACGCCGAGC GCGTAACCCA GGAGCTGCTG
GAGCTGGTCA AGCTCGGCCA CCTGGCCAAA CGCTATCCGC ACGAGCTGTC CGGCGGGCAG
CAACAGCGTG TCGCCCTGGC CCGCGCCCTG GCGCCGGAAC CACAGCTGCT GCTGCTCGAC
GAGCCCTTTT CCAACCTCGA TGGCGAGTTG CGTCGACGCC TCAGTCATGA GGTGCGCGAG
ATTCTCAAGG CGCGCGGCAC CAGCGCCATT CTGGTCACCC ACGATCAGGA AGAGGCTTTC
GCCGTCAGCG ACCACGTCGG CGTCTTCAAT CAGGGCCGTC TGGAGCAGTG GGATACGCCG
TTCAATCTGT ACCACGAGCC GCTCACCCCC TTCGTCGCCA GCTTCATCGG CCAGGGCTAC
TTCATTCGCG GCCAGTTGCT CAGCCCGGAT ACGGTGCAGA CCGAGCTGGG AGTGATTCGC
GGCAACCGTG CCTATACCTG GGCACAGGGC AGCGCGGTGG ACGTGCTGCT GCGTCCGGAC
GACATCGTCC CGGATGAGAG CAGCGGGCTG AAGGCGCGCA TCGTCGGCAA GACCTTCCTC
GGCGCCGCCA CTCTCTATCG CCTGCAGCTA CCCACCGGCA GCCAGCTGGA ATCGATTTTC
CCCAGCCATG CCGATCACCT GCCGGGTGAC GAAGTGGGCA TCCGCATCGC CGCCGATCAC
CTGGTGGCCT TCCCGGCTCT GGGCAGCGTG GCGGCGCAGT TGCAGCTGAC CGACTCCGGC
GGCGTGCGCC GGGTCAGCAG CAACTGA
 
Protein sequence
MSEPLLQLRG LNCGYHAHKV VQDLDLHLNA GDIGCLLGPS GCGKTTTLRA IAGFEPVLEG 
EIELAGEVIS RAGFTLAPEK RHIGMVFQDY ALFPHLSVAE NIAFGIRKQP NAERVTQELL
ELVKLGHLAK RYPHELSGGQ QQRVALARAL APEPQLLLLD EPFSNLDGEL RRRLSHEVRE
ILKARGTSAI LVTHDQEEAF AVSDHVGVFN QGRLEQWDTP FNLYHEPLTP FVASFIGQGY
FIRGQLLSPD TVQTELGVIR GNRAYTWAQG SAVDVLLRPD DIVPDESSGL KARIVGKTFL
GAATLYRLQL PTGSQLESIF PSHADHLPGD EVGIRIAADH LVAFPALGSV AAQLQLTDSG
GVRRVSSN