| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3323 |
|---|
| Symbol | |
|---|
| ID | 5105796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3666691 |
|---|
| End bp | 3668826 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640504580 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001188808 |
|---|
| Protein GI | 146308343 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.444283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGGCTA GAGCGAGATT GCCAATACTC TCGTCTGACT GCCGCTGTAA GCACCGATAC
AAGGAACTGC CTTTGAAGCT GGAATTGAAA AACAGCTTGT CGCTCAAGTT ACTCCGCGTG
GTGCTGCTGT CGGCGCTGGT GGTCGGGGTA GTACTGAGCT GCGCACAGAT CGTCTTCGAT
GCCTACAAGA CGCGGCAGGC GGTAGCCAAC GATGCCCAGC GCATCCTCGG CATGTTCCGC
GACCCCTCGA CCCAGGCGGT ATACAGCCTG GATCGCGAAA TGGGCATGCA GGTCATCGAG
GGGTTGTTCC AGCACGAGTC GGTGCGCTAT GCGGCCATCG GCCATCCCAA CGAGCCGATG
CTGGCGGAAA AATCGCGCGA ACTGGTACAG ATCGCGACCC GCTGGCTGAC CGATCCGATT
CTCGGCCAGG AGCAGCAGTT TTCCACCAAA CTGGTTGGCC GTGGTCCCTA CAGCGAGTAT
TACGGCGACC TCAACATCAC CCTGGACACC GCGCCCTACG GCGAGAGTTT CGTCACCAAC
TCGGTGATCA TCTTCGTCTC CGGCGTGCTG CGCGCCATGG CCATGGCCCT GGTGCTGTAC
CTGGTCTACC ACTGGCTGCT GACTAAGCCG CTGTCGAAGA TCATCGAGCA CCTGACCAGC
ATCAACCCGG ACCGCCCCAG CGAACACAAG CTGCCCATGC TCAAGGGCAA CGAGAAGAAC
GAGCTGGGCC TGTGGATCAA CACCGCCAAC CAGCTTCTCG CCTCCATCGA GCGTAACACC
CACCTGCGCC GCGAAGCGGA GAACAGCCTG CTGCGCATGG CCCAGTACGA CTTCCTCACC
GGCCTGCCCA ACCGCCAGCA GCTGCAGCAG CAACTCGACC AGATTCTTGA AGACGCCGGC
CGCCTGCAGC GCCGCGTCGC CGTGCTCTGC GTTGGCCTGG ACGACTTCAA GGGCATCAAC
GAACAGTTCA GCTACCAGAG CGGCGATCAG TTGCTGCTGG CGCTGTCTGA CCGCCTGCGC
AGCCACAGCG GCCGCCTCGG CGCCCTGGCC CGCCTGGGCG GCGACCAGTT CGCCCTGGTC
CAGGCCGATA TCGAGCAGCC TTACGAAGCG GCCGAACTGG CGCAGAGCGT GCTGGACGAT
CTGGAGCTGC CGTTCCTGCT CGATCATCAG GAAGTGCGCC TGCGCGCGAC CATCGGCATC
ACCCTGTTCC CCGAGGATGG CGACAGCACC GAAAAGCTGC TGCAGAAAGC CGAACAGACC
ATGACCCTGG CCAAGAGCCG CTCGCGCAAC CGTTACCAGT TCTACATCGC CAGCGTCGAC
AGCGAGATGC GTCGTCGCCG CGAACTGGAG AAGGACCTGC GCGACGCCCT GGCCCTGAAT
CAGCTGCATC TGGTCTATCA GCCGCAGGTG GACTACCGCG ATCACCGCGT GGTCGGCGTC
GAGGCCCTGC TGCGCTGGCA GCACCCGCAA CACGGTTTCG TCGCGCCCGA CCTGTTCATC
CCGCTGGCGG AACAGAACGG CACCATCATC CCCATCGGCG AGTGGATTCT CGATCAGACC
TGCCGCCAGC TGCGCGAATG GCACGATCAG GGATTCACCG ACCTGCGCAT GGCCATCAAC
CTGTCCACCG TGCAGCTGCA CCACGCCGAG CTGCCGCGGG TGGTCAACAA CCTGATGCAG
GTCTATCGTC TGCCGCCCAG AAGCCTGGAG CTGGAGGTCA CCGAAACCGG CCTGATGGAA
GACATCAGCA CCGCCGCCCA GCACCTGCTG AGCCTGCGCC GCTCCGGAGC CCTGATCGCC
ATCGATGACT TCGGTACCGG CTACTCGTCG CTGAGCTATC TCAAGAGCCT GCCGCTGGAC
AAGATCAAGA TCGACAAGAG CTTCGTGCAG GACCTGCTGG AAGACGAGGA CGACGCCACC
ATCGTTCGCG CCATCATTCA GCTGGGCAAG AGCCTGGGTA TGCAGGTCAT CGCCGAAGGC
GTGGAGACCG TCGAGCAGGA AGCCTACATC ATCGCCCAGG GCTGTCATGA GGGTCAGGGC
TACCTGTACA GCAAGCCGCT ACCGGCGCGC GAGCTGACCT TGTTCCTCAA GCAGGCCCGC
CGCCTCAGTG CCGCGGCCAA CCCCGCCACG CTCTGA
|
|---|
| Protein sequence | MTARARLPIL SSDCRCKHRY KELPLKLELK NSLSLKLLRV VLLSALVVGV VLSCAQIVFD
AYKTRQAVAN DAQRILGMFR DPSTQAVYSL DREMGMQVIE GLFQHESVRY AAIGHPNEPM
LAEKSRELVQ IATRWLTDPI LGQEQQFSTK LVGRGPYSEY YGDLNITLDT APYGESFVTN
SVIIFVSGVL RAMAMALVLY LVYHWLLTKP LSKIIEHLTS INPDRPSEHK LPMLKGNEKN
ELGLWINTAN QLLASIERNT HLRREAENSL LRMAQYDFLT GLPNRQQLQQ QLDQILEDAG
RLQRRVAVLC VGLDDFKGIN EQFSYQSGDQ LLLALSDRLR SHSGRLGALA RLGGDQFALV
QADIEQPYEA AELAQSVLDD LELPFLLDHQ EVRLRATIGI TLFPEDGDST EKLLQKAEQT
MTLAKSRSRN RYQFYIASVD SEMRRRRELE KDLRDALALN QLHLVYQPQV DYRDHRVVGV
EALLRWQHPQ HGFVAPDLFI PLAEQNGTII PIGEWILDQT CRQLREWHDQ GFTDLRMAIN
LSTVQLHHAE LPRVVNNLMQ VYRLPPRSLE LEVTETGLME DISTAAQHLL SLRRSGALIA
IDDFGTGYSS LSYLKSLPLD KIKIDKSFVQ DLLEDEDDAT IVRAIIQLGK SLGMQVIAEG
VETVEQEAYI IAQGCHEGQG YLYSKPLPAR ELTLFLKQAR RLSAAANPAT L
|
|---|
| |