Gene Pmen_3316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3316 
Symbol 
ID5105789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3658871 
End bp3659596 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content67% 
IMG OID640504573 
ProductRDD domain-containing protein 
Protein accessionYP_001188801 
Protein GI146308336 
COG category[S] Function unknown 
COG ID[COG1714] Predicted membrane protein/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.742207 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTCAC GCTCAAGCGC CAAGCTTTCG CTTAGCCAGC CCCCCTTGGA TACGCGCTAT 
CAGGTCGAAA CGCCGGAAGG CATCGACCTG CATCTGCGGC CGGCCGGTCT GGTGCCGCGT
GCCCTGGCGT TCGCCATCGA CCTGGCCATC CGCGGCCTGC TTCTGCTGGT GATGTTCATC
GTGCTTGGCC TGCTCGGACA GTTCGGCATG GGCCTGGGCA CCATCCTGCT GTTTCTGGTC
ACCTGGTGGT ACATGGTGCT GTTCGAGGTA CTCAACCAGG GGCGCTCGCC CGGCAAACAG
ATGCTCGGCC TGCGCGTGGT ACATGATGAC GGCACGCCAA TCGGCTGGGC CGCTTCACTG
ACCCGCAACC TGCTGCGCTT CGTCGACATC CTGCCGTTCG GTTACACTCT GGGCATTCTC
AGCTGCCTGA ACCATCCCGC CTTCAAGCGC CTCGGCGATA TCGCCGCCGG CACCCTGGTG
GTCTATCGCG ACGCTCCCCT GACGCGCCCG CAACTGCCGG AGGCCGAACC GCTGCCGACG
CCCTTTGCGC TGACCCTCGG CGAACAACGC GCCCTGCTCG GTTTCGCCGA ACGCGGCGCG
CAATTGTCCG CGGCGCGCCG CGCCGAACTG GCCGCCCTGC TGGCCGAGCC GCTGCAGTTG
CCTGCCGAAC AGGCGGAAGT GCGCTTGAAC GGCATCGCCC GTGGCCTGCT GGGAACGGCG
CCATGA
 
Protein sequence
MPSRSSAKLS LSQPPLDTRY QVETPEGIDL HLRPAGLVPR ALAFAIDLAI RGLLLLVMFI 
VLGLLGQFGM GLGTILLFLV TWWYMVLFEV LNQGRSPGKQ MLGLRVVHDD GTPIGWAASL
TRNLLRFVDI LPFGYTLGIL SCLNHPAFKR LGDIAAGTLV VYRDAPLTRP QLPEAEPLPT
PFALTLGEQR ALLGFAERGA QLSAARRAEL AALLAEPLQL PAEQAEVRLN GIARGLLGTA
P