| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3303 |
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| Symbol | |
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| ID | 5105776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3645587 |
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| End bp | 3646867 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504560 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001188788 |
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| Protein GI | 146308323 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.99332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCCG CCATTCTGCT GGGCAGCTTC ATTGCCCTGA TTCTGTTGCG CGTCCCGGTC
GCCTATGCCC TCGGCCTGGC CACCCTGATC GGCGCCTGGT GGATAGAAAT TCCCCTGCAC
GCGGTGATGA TCCAGATCGC CGGTGGCGTG AACAAATTCT CCCTGCTGGC CATCCCCTTC
TTCGTCCTGG CCGGCGCGAT CATGGCAGAA GGCGGCATGG CGCGGCGCCT GGTGGCCTTC
GCCGGGGTGC TGGTGGGCTT CGTCCGCGGC GGCCTGTCGC TGGTCAACAT CACCGCCTCG
ACCTTCTTCG GCGCCATCTC CGGCTCGTCA CTGGCCGACA CCGCCTCGGT GGGTTCGGTG
CTGATCCCGG AAATGGAAAA GAAGGGCTAT CCGCGCGAAT TCTCCACCGC GGTCACCGTC
TCCGGCTCGG TGCAGGCGCT GCTCACCCCG CCCAGTCACA ACTCGGTGAT CTACTCGCTG
GCCGCCGGCG GCACGGTGTC GATCGCCGCG CTGTTCGTCG CCGGCATCGG CCCGGGCCTG
CTGCTCAGCG CCACCATGGC CACGCTGTGC CTGCTGTTCG CGCGCAAGCG CAACTACCCC
AAGGGCGAGG TGATTCCGCT GCGCCAGGCG CTGAAGATCT GCGTCGAGGC GCTGTGGGGC
CTGATGACCA TGGTGATCAT CCTCGGCGGC ATCCTCAGCG GCGTGTTCAC CGCCACCGAG
TCGGCAGCGG TGGCCGTGGT CTGGGCCTTC TTCGTGACCA TGTTCATCTA CCGCGACTAC
AAGTGGAGTG AACTGCCGAA GATGCTGCAC CGCACGGTGC GCACCCTGTC GATCGTGATG
ATACTCATCG CCTTCGCCGC CAGCTTCGGC TACATCATGA CCCTGATGCA GATTCCGTCG
AAGATCACCA CGGCCTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT CATGTGCGTC
AACTTCATGC TGCTGGTGCT GGGCACGCTG ATGGACATGG CGCCGCTGAT CCTGATCCTC
ACGCCCATCC TGCTACCGGT GGTCACCTCC TTCGGCGTCG ACCCGGTACA CTTCGGCATG
ATCATGCTGG TCAACCTGGG TATCGGCCTG ATCACGCCGC CGGTGGGCGC GGTGCTGTTC
GTCGGTGCCG CCATCGGCAA GGTCAGCATC GAGACCACGG TCAAGGCGCT GTTGCCGTTC
TACGCTGCGC TGTTCGCGGT GCTGATGGCA GTCACCTATA TCCCGGCCAT CTCGCTATGG
CTGCCGAGCG TGGTGTTGTA A
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| Protein sequence | MDAAILLGSF IALILLRVPV AYALGLATLI GAWWIEIPLH AVMIQIAGGV NKFSLLAIPF
FVLAGAIMAE GGMARRLVAF AGVLVGFVRG GLSLVNITAS TFFGAISGSS LADTASVGSV
LIPEMEKKGY PREFSTAVTV SGSVQALLTP PSHNSVIYSL AAGGTVSIAA LFVAGIGPGL
LLSATMATLC LLFARKRNYP KGEVIPLRQA LKICVEALWG LMTMVIILGG ILSGVFTATE
SAAVAVVWAF FVTMFIYRDY KWSELPKMLH RTVRTLSIVM ILIAFAASFG YIMTLMQIPS
KITTAFLTLS DNRYVILMCV NFMLLVLGTL MDMAPLILIL TPILLPVVTS FGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGAAIGKVSI ETTVKALLPF YAALFAVLMA VTYIPAISLW
LPSVVL
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