| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3297 |
|---|
| Symbol | |
|---|
| ID | 5106804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3639593 |
|---|
| End bp | 3640654 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640504554 |
|---|
| Product | periplasmic lipoprotein-like protein |
|---|
| Protein accession | YP_001188782 |
|---|
| Protein GI | 146308317 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3489] Predicted periplasmic lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCATA GAACCCTGAT CGCTTCACTG CTCGGCCTGG CCCTGGTCGG GTGCAACCAG
CAGGACCCTC GCGCCAAGGT CAGCGCCGCG CTGGTCGACG GCGTGCTGCT GCCGGCCTAC
AGCAGCTGGC AGGAAGCCGA TCGCCAGCTC GCCGGGAGCA CCGCCGCGTT CTGCGCGGGC
ACTGCCGATC TGCCGGCCGC GCGCCAGGCC TTCCTCGGCG CGCAGAATGC CTGGGCCGGG
CTGCAGCCCC TGCTGATCGG GCCGCTCGCC GAAGGCAATC GCGCCTGGCA GATCCAGTTC
TGGCCGGACA AGAAGAACCT GGTGCAGCGC CAGGTCGAAG CGCTGCTGAA GAACAAGCCG
CAACTGACCC CGGCCGACCT GGCCAGCGCC AGCGTGGTGG TACAGGGCCT GACCGCTTAT
GAGTACGTCC TGTTCGATGC CAACCTGGAC CTCAACGATG CCGAGCAGAA GGCGCGCTAC
TGCCCGCTGC TGCAGGCCAT CGGCACGCAC CAGCAGGCGC TGGCTGCCGA TATCGTCGAG
CAATGGCAGG CCAAGCCGGG CATGGCCGAG CAGCTGAGAA AATTCCCCAA CGAGCGTTAT
GCCGAGGCCA ACGAGGCCAT CGCCGAGCTG CTGCGCGTGC AGGTCAGTGC GCTTGACGGC
CTGAAGAAGA AACTCGGCGC GCCCATGGGC CGCCAGAGCA AGGGCATTCC CCAACCCTAC
CAGGCCGAGT CCTGGCGCAG CGCCGCCAGC CTGAGCAACC AGGCTGCCGC CCTGGCCAGC
GCCGAACGGC TCTGGCACGG CAGCAACCGC GACGGCATCC AGTCCCTGCT GGACAAGGAT
CAGGCGCAGC TGGGCCAGCG CATCGACGCC GCCTACCAGG ACACCCGTCA GCGCCTGGCC
GCCCTGGATC GCCCGCTGGG CGAACTGCTT GCCGACGACG CCGGCCGCAC CAGCCTCAAC
GAGCTGTACG ACAGCCTCAA TCGCCTGCAT CGCCTGCAGG AGAGCGAACT GGCCAAGGCG
CTCGGCGTGC AGATCGGCTT CAATGCCCAC GACGGAGACT GA
|
|---|
| Protein sequence | MLHRTLIASL LGLALVGCNQ QDPRAKVSAA LVDGVLLPAY SSWQEADRQL AGSTAAFCAG
TADLPAARQA FLGAQNAWAG LQPLLIGPLA EGNRAWQIQF WPDKKNLVQR QVEALLKNKP
QLTPADLASA SVVVQGLTAY EYVLFDANLD LNDAEQKARY CPLLQAIGTH QQALAADIVE
QWQAKPGMAE QLRKFPNERY AEANEAIAEL LRVQVSALDG LKKKLGAPMG RQSKGIPQPY
QAESWRSAAS LSNQAAALAS AERLWHGSNR DGIQSLLDKD QAQLGQRIDA AYQDTRQRLA
ALDRPLGELL ADDAGRTSLN ELYDSLNRLH RLQESELAKA LGVQIGFNAH DGD
|
|---|
| |