| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3284 |
|---|
| Symbol | |
|---|
| ID | 5106791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3630438 |
|---|
| End bp | 3630884 |
|---|
| Gene Length | 447 bp |
|---|
| Protein Length | 148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640504541 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001188769 |
|---|
| Protein GI | 146308304 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATG CCAAGCTGCT GCAACTGGTA GTCGACGCCT CCAACGACGG AATCGTGGTG
GCCGAGCAGG AGGGCGAAGA CAACATCCTG ATCTACGCCA ACGCGGCATT CGAACGCCTG
ACCGGCTATC CCTGCGACGA TATCCTCTAT CAGGACTGCC GTTTCCTGCA GGGCAACGAT
CGTGCGCAGA TCGGCCTGCA GGCCATCCGC GACGCGGTCA AGGCGCACAA GCCGTGCCGC
CAGATCATCC GCAACTACCG CAAGGACGGC AGCGCCTTCT GGAACGAACT GTCGATCACC
CCGGTGCTCA ACGAGAGCGA CCAGCTGACC TACTACATCG GCATTCAGAA GGACGTCACC
GAACAGGTGG AAGCCCAGCA ACGCGTGCGC GAGCTGGAAG CCGAAGTGAC GGAGCTGAAA
GCCGAGCTGG CACGCCTGAA AAACTGA
|
|---|
| Protein sequence | MINAKLLQLV VDASNDGIVV AEQEGEDNIL IYANAAFERL TGYPCDDILY QDCRFLQGND
RAQIGLQAIR DAVKAHKPCR QIIRNYRKDG SAFWNELSIT PVLNESDQLT YYIGIQKDVT
EQVEAQQRVR ELEAEVTELK AELARLKN
|
|---|
| |