| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3265 |
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| Symbol | |
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| ID | 5106772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3614297 |
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| End bp | 3615820 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504522 |
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| Product | fumarase |
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| Protein accession | YP_001188750 |
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| Protein GI | 146308285 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTGA TCAAGCAGGA CGACCTGATT CAGAGCGTCG CCGACGCCCT GCAGTTCATC
TCCTATTACC ACCCCGTCGA CTTCATCCAG GCCATGCACG AGGCCTACCT GAAGGAAGAG
TCCCCGGCGG CCAAGGACTC CATGGCGCAG ATCCTGATCA ACTCGCGCAT GTGCGCCACC
GGCCACCGCC CGATCTGCCA GGACACCGGC ATCGTCACCG TGTTCATCAA GGTCGGCATG
GACGTGCGCT GGGACGGCGC CACCATGAGC GTCGACGACA TGATCAACGA GGGCGTGCGT
CGCGCCTACA ACCTGCCGGA GAACGTCCTG CGCGCCTCGA TCCTGGCCGA CCCGGCCGGT
GCCCGCAAGA ACACCAAGGA CAACACTCCG GCGGTGATCC ACTACTCCAT CGTCCCCGGC
GACAAGGTGG AAGTGGACGT CGCGGCCAAG GGCGGCGGCT CCGAGAACAA GTCGAAGATG
GCCATGCTCA ACCCGTCCGA CTCCATCGTC GACTGGGTGC TGAAGACCGT GCCGACCATG
GGCGCCGGCT GGTGCCCGCC GGGCATGCTC GGCATCGGCA TCGGCGGCAC CGCCGAGAAG
GCCGCGGTGA TGGCCAAGGA AGTGCTGATG GAGCACATCG ACATTCACGA GCTGCAGGCC
CGCGGCCCGC AGAACCGCAT CGAGGAGCTG CGTCTGGAGC TGTTCGAGAA GGTCAACCAG
CTGGGCATCG GCGCCCAGGG TCTGGGCGGC CTGACCACCG TGCTCGACGT GAAGATCATG
GATTACCCGA CCCATGCCGC GTCCCTGCCG GTGTGCATGA TCCCCAACTG CGCCGCCACC
CGTCACGCCC ACTTCGTGCT CGACGGCTCG GGCCCGGCCG TTCTGGAAGC GCCGGATCTG
GACGCCTACC CGGAAATCGT CTGGGAGGCA GGCCCGAGCG CGCGCCGCGT CAACCTCGAC
ACCATCACCC CGGAAGAGGT GCAGAGCTGG AAGCCGGGCG AGACCGTGCT GCTCAACGGC
AAGATGCTCA CCGGCCGCGA CGCCGCGCAC AAGCGCATGG TCGACATGCT GAACAAGGGC
GAGCAACTGC CTGTGGACCT CAAGGGTCGC TTCATCTATT ACGTCGGCCC GGTCGATCCG
GTCGGCGATG AAGTGGTTGG CCCGGCTGGC CCCACTACCG CCACCCGTAT GGACAAGTTC
ACCCGCCAGA TCCTCGAGCA GACCGGTCTG CTGGGCATGA TCGGCAAGTC CGAGCGCGGC
CCCATCGCCA TCGACGCGAT CAAGGACAAC AAGGCCGTGT ACCTGATGGC CGTCGGCGGC
GCTGCCTACC TGGTGGCCCA GGCGATCAAG AAGTCCAAGG TGCTGGCCTT CGAAGAACTG
GGTATGGAAG CCATCTACGA GTTCGAAGTC AAAGACATGC CGGTGACCGT CGCGGTCGAC
ACCAAGGGCG AATCGGTACA CATCACCGGC CCTGCGATCT GGAACAAGAA GATCGCCGAA
AGCCTGGCGG TGGAAGTGAA GTAA
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| Protein sequence | MTVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLKEE SPAAKDSMAQ ILINSRMCAT
GHRPICQDTG IVTVFIKVGM DVRWDGATMS VDDMINEGVR RAYNLPENVL RASILADPAG
ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM
GAGWCPPGML GIGIGGTAEK AAVMAKEVLM EHIDIHELQA RGPQNRIEEL RLELFEKVNQ
LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGS GPAVLEAPDL
DAYPEIVWEA GPSARRVNLD TITPEEVQSW KPGETVLLNG KMLTGRDAAH KRMVDMLNKG
EQLPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG
PIAIDAIKDN KAVYLMAVGG AAYLVAQAIK KSKVLAFEEL GMEAIYEFEV KDMPVTVAVD
TKGESVHITG PAIWNKKIAE SLAVEVK
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