| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3238 |
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| Symbol | |
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| ID | 5106745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3588825 |
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| End bp | 3589697 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504495 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001188723 |
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| Protein GI | 146308258 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.996927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAT TCGAACACCT GCAGGTTTTC CAGAGCATGA GCCGCTCGCC CCACGCGCGG
CTGCACGCCC ATGCCGAGCT GGGCGATGGC CTGGCCGTGG CGCGCTGGAG CAATGCCCAC
GATGCCCGTG ACTACCTCGC CCCCAGCCAT CACACGCTGT CCTGCTACCT GGCCGGCGGC
ACCGGCACCT TTCGCCGCGA ACGGCCGGGC GACAAGGGCG CCCCGGACAA GCTGTGCATT
CTGCCGGCCG AGCACCAGTC GGCCTGGATC ATCAATGGCG AGATCCAGCT GGCCCACCTC
TATATCGAAC AGGAGCAGTT CGCCCTCGGC GCGGTCGCCC TGCTCGACCG CGAGCCGCGC
AGCCTTCAGC TGCAGGAGGC GACCTTTGTC GAAGACGCCG AGCAGGCCGT GCGCTTTCGC
CGCCTGTGCG CGCTCGACTG GCAGGAACCC GGCGAGCGCC TGCTGGCCAG CAGCCTGGCC
CACGAGCTGC TCGATCACGC CCTGCTCAAT CAGGTCGGCC TGCGCCAGGG CCTGCGTCTG
AAGGGCGGCC TGGCTCCGCT GCAGCGCAGG CGCGTGCGCG ACTTCATCGA ACAGCACCTG
AGCGAGCCGC TGCCTCTGAG CCAACTGGCC GCGCTCTGCG CCTTGTCGGA ATACCACTTC
GCGCGCATGT TCCAGGCCAG CTTCGGCCTG CCGCCGCACC GCTACGTCCT GGCGCGCCGC
CTGGCCCACG CCTGCCGCCT GCTGCGTCAG TCCGCGCTGC CGCTGGGCGA AATCGCCCTG
GACAGCGGTT TCGCCAGCGC CAGCCATTTC AGCAACCGTT TCCGTCAGGC GCTGGGGGCG
ACGCCGGGAC AGTACCGCGC GGCCTTCCGC TAA
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| Protein sequence | MAQFEHLQVF QSMSRSPHAR LHAHAELGDG LAVARWSNAH DARDYLAPSH HTLSCYLAGG
TGTFRRERPG DKGAPDKLCI LPAEHQSAWI INGEIQLAHL YIEQEQFALG AVALLDREPR
SLQLQEATFV EDAEQAVRFR RLCALDWQEP GERLLASSLA HELLDHALLN QVGLRQGLRL
KGGLAPLQRR RVRDFIEQHL SEPLPLSQLA ALCALSEYHF ARMFQASFGL PPHRYVLARR
LAHACRLLRQ SALPLGEIAL DSGFASASHF SNRFRQALGA TPGQYRAAFR
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