| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3223 |
|---|
| Symbol | |
|---|
| ID | 5106730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3565272 |
|---|
| End bp | 3567317 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640504480 |
|---|
| Product | oxidoreductase FAD-binding subunit |
|---|
| Protein accession | YP_001188708 |
|---|
| Protein GI | 146308243 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.578797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC TTCCCAGCCA TCGGCACTCG CCCTGGCATG CCGGTGAAAA GCAACTGCAG
GAAAAGGTCG GCGTCGCCGA ACGCATGGAA GTGCTCGGGC AGAAGGTGAT CCGCGACTAC
ATGCCGGATC AGCATCGCGA CTTCTACCGG CAACTGCCCT TCATGATCGC CGGCGCCGTG
GATGCTGCCG GCCAGCCCTG GGCCACTCTG ATCGAAGGCG AGGAGGGCTT CGTCACCTCG
CCCGACCCGC GTCAGTTGTC GTTCGATCTG GCCGCCATGG CGCTCGATCC GCTCGACCCG
GCCACCAGTG GACTGCATGC GGGCGATGCC ATCGGCCTGC TCGGCATCGA GCTGCACACG
CGGCGGCGCA ATCGCATCAA CGGCCATATC CGCCAGGCCT CGGCGCAGCG CCTGGACATC
GATGTGGAGC ATTCCTTCGG CAACTGCCCG CAGTACATTC AGCTGCGCCA GTACCGCCGT
GTGCACCAGC GAGGCGTCGA GCGCCTGGAC GCGACCGGGC TGGATGCGCG CAGCGCCGAG
ATGATCGGCA GCGCCGATAC CTTTTTCGTC GCCAGCTACG TCGAGCACGA CGACGGCCGC
CGTTCGGTGG ACGTCTCGCA CCGTGGCGGG CGCGCCGGCT TCGTACGGGT GCAGGGCAAT
CGCCTGACCA TTCCCGACTA CGCCGGCAAC CTGCATTTCA ATACCCTGGG CAACCTCAGC
GTCAACCCGC GTGCCGGGCT GCTGTTCGTC GACTTCGCCA CGGGCGACGT GCTGCAACTG
GCCGGCCGCG CCGAGATCAT CCTCGACAGC CCGCTGATCA ATGCCTTCGA AGGCGCCGAG
CGGCTGTGGA CCTTCGACGT CGAGCAGGTG GTGCTGCGCC CGGCGGCGGC TTCGCTGCGC
TGGGCCTTCG AAGAATATGC ACCGACCAGC CTGATGACCG GCACCTGGGC AGAAACCGAT
GCGCGCCTGC GCGAGCGTGA GCAGCGCAAC CAGTGGCAGC GCTGGCGTGT GCAGAGTGTG
CAGCAGGAAA GCAGCGATAT CCGCTCCTTC GTGCTGGCGC CGGAGCAGGG TGCCGCACCG
GGTTTCGCTG CCGGTCAGCA CCTGCCGATT CGCATCGCCA CCGCCAGCGG TGAGACCCTG
CTGCGCACCT ACAGCCTCTC CAGTGCGCCG TCGGATGGTT TCCTGCGTAT CAGCGTCAAG
GCGCAGGGCG TGGTGTCGCG GCATCTGCAC GGGCAGGTTC GGGTGGGCGA TGTGCTGGAG
GTGCGTGCGC CGCTGGGCAG CTTCACCCTG AACAGCGAAA GCCGCCGGCC GCTGGTGCTG
ATTGGTGCCG GCGTCGGCAT CACGCCTTTG CTGTCGATGC TGCGCGAGCA GGTAGCGTTG
GGGCAGGGCA GGCGCATGCA TTTCTTCCAG GGTGCGCGGA CGCTGAGCGA CCTGCCGTTT
CAGTCCGAGC TGCATGAGCT GGTGCAGCGC GCGGGCGGCC TGCTGCAGGT GCACCGCGCC
CTCAGTGCGC CGGAGGCGGA CGCTGTAGTG GGCCGCGACT ACGAGCAGCA GGGGCGTATC
GACCTGGCAC AGATCAAGGC GGCGCTGTCG TTCGACGACT ACGACTTCTA CCTGTGTGGC
CCGGCCGCCT TTACGCAGGC GATCTACGAT GGCCTGCGCG ATCTCAATGT CGCCGATGAG
CGCATCCACG CCGAGGCGTT CGGCCCCTCG ACGCTCACGC GCCGTACCGA TGGCCAGGTG
ACGACCCTCG TGCAGCCGCC CGCCGCGAGC GAACCGGTGC CGGTGTACTT CAGCGCTTCG
AGCAAGGAGG CGCGCTGGAC GCCGGACAGC GGCAGCCTGC TGGAGCTGGC GGAAAGCCGT
GGCCTGACGC CCGAGTTCAG TTGCCGCGGC GGTTCCTGCG GCACCTGCAA GACGCGCCTG
GTCAGCGGCC AGGTGCACTA CCCCAATCCG CCGGCCGAGC TGCCGAATGA TGGCGGCGTG
CTGATCTGCT GCGCGGTGCC GGCAAAAGGC GAAGAAGGCG TGCAACCCCT GGTGCTGGAT
CTGTGA
|
|---|
| Protein sequence | MQQLPSHRHS PWHAGEKQLQ EKVGVAERME VLGQKVIRDY MPDQHRDFYR QLPFMIAGAV
DAAGQPWATL IEGEEGFVTS PDPRQLSFDL AAMALDPLDP ATSGLHAGDA IGLLGIELHT
RRRNRINGHI RQASAQRLDI DVEHSFGNCP QYIQLRQYRR VHQRGVERLD ATGLDARSAE
MIGSADTFFV ASYVEHDDGR RSVDVSHRGG RAGFVRVQGN RLTIPDYAGN LHFNTLGNLS
VNPRAGLLFV DFATGDVLQL AGRAEIILDS PLINAFEGAE RLWTFDVEQV VLRPAAASLR
WAFEEYAPTS LMTGTWAETD ARLREREQRN QWQRWRVQSV QQESSDIRSF VLAPEQGAAP
GFAAGQHLPI RIATASGETL LRTYSLSSAP SDGFLRISVK AQGVVSRHLH GQVRVGDVLE
VRAPLGSFTL NSESRRPLVL IGAGVGITPL LSMLREQVAL GQGRRMHFFQ GARTLSDLPF
QSELHELVQR AGGLLQVHRA LSAPEADAVV GRDYEQQGRI DLAQIKAALS FDDYDFYLCG
PAAFTQAIYD GLRDLNVADE RIHAEAFGPS TLTRRTDGQV TTLVQPPAAS EPVPVYFSAS
SKEARWTPDS GSLLELAESR GLTPEFSCRG GSCGTCKTRL VSGQVHYPNP PAELPNDGGV
LICCAVPAKG EEGVQPLVLD L
|
|---|
| |