| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3194 |
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| Symbol | |
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| ID | 5106523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3531902 |
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| End bp | 3534082 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504451 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001188679 |
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| Protein GI | 146308214 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.178802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0329837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGGGT TCCCGATCCG TTTTCTCGCA GAACTGCCCG AACAGGGACA GCTACTGCTC
GACTGCAGCC ATGATCCCTG GCTGGTGCTG CTGTCCTACG CCATTGCCAC CGGCGGCAGC
CTCTGCACCC TGATCATCAC CCAGCATCTG CAACAGGTGC AGCGACGCAG CATGCGCCTG
GCCTGGGGCC TGGTCGGCGG CCTGTGTCTG GCTGGCGGCA TCTGGTCCAT GCACTTCATC
GGCATGCTGG CCTTCCAGGC GCCGGTCGCC ATCGCCTACG ACCTGGCCAC CACCCTGCTG
TCGCTGCTGG TGGCGCTGGC CGCCGCCCTG CTCGCCCTGT ACTGCATGGC CATGCCGAAC
CCCGGCCTGA GCCGGCAGCT ACTGGCCGCG GTGATCATCG GCCTGGGCAT CAGCGCCATG
CACTACAGCG GCATGGCGGC GATCCGCTCG CCGGCCGAGG CTTACTACCA GGGCGACCTG
TTCGCACTGT CCGTCGGCAT CGCCATCAGT GCCAGTTTCG CCGCCTTGCT GCTCAACCGC
TACGTGCAGC ATGGCGCTCC CCGCCACCAG CACTGGCTCA GGCTCTGTGC AGCGCTGGTG
ATGGGCGCGG CGATTGCCTC CATGCACTAC ACCGGCATGG CTTCGCTCAA TCTGGTGGTG
CCGGAGGGCA CGCCGCTGCA ACTGCGCAGT GCCGACAATG CCGGACAGCT GGTGCTGATC
GTCGCCTCGA TCACCCTGCT GATTCTCGGC CTGAGCCTGG CCGCGGCCTG GGTCGGCCGC
AAGCTGGACG ACAAGGAGCG CGACCTGCAG CGGGTCAACA ACCTGCTGAT GCAGCTCGAC
CAGGCCAAGG CCTCACTGGA GCAGGTAGCG CATTTCGACC CCCTGACCGA GCTGCTCAAC
CGCCGCGGCT TCAACCGGGT GTTCGCCGCT ACCCTGGAAG AGCACGCCAT CACCGGACGC
AGCCTGGCGG TGATGTTTCT CGACGTCGAC CATTTCAAAC GCGTCAACGA CACCCTGGGC
CACGATGCCG GCGACGAACT GCTGCGCGTG GTGGCGCAGC GCATCCGCGG CTCCCTGCGC
GAACGCGACA TCATCGCCCG CTTCGGCGGC GACGAGTTCT GCGTGGTCGC CAGCCTGGAC
AGCAATGCAG CACCCCGGGT GCTGGCCCAG CGCATCCTGG AGCAGATGAA GGAGCCGATC
AGCCTGACCG GCCGCAGGAT CGTGATGACC ACCAGCGTCG GCATCAGCCT GTTCCCGCAG
GACGGCAACA GCGCCGAGGA ACTGCTCAAG CACGCCGACC TGGCGCTGTA CCAATCCAAG
GGCAGCGGGC GCAACGTGGT GCACTTCTTC AACCCGCATC TCAAGCAGAA GGCTTCGTTC
GAATTGCAGC TGGAGGAGGA CCTGCGCCAG GCCCTGCAGC AGGACAACGG CCTGATGCTG
TTCTATCAGC CGATCATCGA CCTGCGCAGC GGCGCGCTGA GCAAGCTCGA AGCCCTGGTG
CGCTGGCATC ATCCCCTGCA CGGTTTGCTA ACCCCCGAAC GTTTCATCGC CATCGCCGAA
GCCAACGGTT TCATCGATCA GCTCGACGAC TGGGTGCTGC GCCGCGCCTG CCACGACCTC
AACAGCCTCG AGCACATGGG CTATCCGGGG CTGAAGATCG CGGTCAACTG CTCGGCGCTG
AACCTGGCCA ACGACCAGTT GCCGGGTCGC ATCGAACAGC ACCTGCAGGC CACCCGCTGC
CCCGCCCAGT GCCTGGAGCT GGAAGTCACC GAAAGCGCGC TGTTGAGCAA CATCAACCGC
GCCATCGGTC TGCTCGAGCG CATACGGGCC CTGGGCGTAT GCCTGTCCAT CGACGACTTC
GGCACCGGCT ACTCCTCGCT CGCCTACCTG CGCCGGCTGC CGCTGGATAC CCTGAAGATC
GACCGTTCCT TCATCCAGGA TCTGGCCAAT TCGAACCAGG ACCGCGAGAT CGTCCACGCC
ATCATCGCCA TGGCCCACGC CCTGCACCTG AAGGTAGTGG CCGAGGGCGT GGAAACCGGC
GAACAACTGG CGTTCCTGCA GGATCGTGGC TGCGACCAGG TGCAGGGCTA CCTGTTCAGC
AAGCCGCTGC CGCTGGAAGA AATCGTCAGC CGCTTCCCGC CGCATGTCCG ACCGCTGGAA
CGTGTGGGTA TGAGGCTCTA G
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| Protein sequence | MQGFPIRFLA ELPEQGQLLL DCSHDPWLVL LSYAIATGGS LCTLIITQHL QQVQRRSMRL
AWGLVGGLCL AGGIWSMHFI GMLAFQAPVA IAYDLATTLL SLLVALAAAL LALYCMAMPN
PGLSRQLLAA VIIGLGISAM HYSGMAAIRS PAEAYYQGDL FALSVGIAIS ASFAALLLNR
YVQHGAPRHQ HWLRLCAALV MGAAIASMHY TGMASLNLVV PEGTPLQLRS ADNAGQLVLI
VASITLLILG LSLAAAWVGR KLDDKERDLQ RVNNLLMQLD QAKASLEQVA HFDPLTELLN
RRGFNRVFAA TLEEHAITGR SLAVMFLDVD HFKRVNDTLG HDAGDELLRV VAQRIRGSLR
ERDIIARFGG DEFCVVASLD SNAAPRVLAQ RILEQMKEPI SLTGRRIVMT TSVGISLFPQ
DGNSAEELLK HADLALYQSK GSGRNVVHFF NPHLKQKASF ELQLEEDLRQ ALQQDNGLML
FYQPIIDLRS GALSKLEALV RWHHPLHGLL TPERFIAIAE ANGFIDQLDD WVLRRACHDL
NSLEHMGYPG LKIAVNCSAL NLANDQLPGR IEQHLQATRC PAQCLELEVT ESALLSNINR
AIGLLERIRA LGVCLSIDDF GTGYSSLAYL RRLPLDTLKI DRSFIQDLAN SNQDREIVHA
IIAMAHALHL KVVAEGVETG EQLAFLQDRG CDQVQGYLFS KPLPLEEIVS RFPPHVRPLE
RVGMRL
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