Gene Pmen_3185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3185 
Symbol 
ID5106514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3521761 
End bp3522804 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content63% 
IMG OID640504441 
Productdiguanylate cyclase 
Protein accessionYP_001188670 
Protein GI146308205 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.106755 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.0939676 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATCC AGACCGCTCG CCTACTCAAG CGCCTGCGCA ACGACTTCCA GCTGTCGATC 
ATCACCCTGA TGGGTCTGTT CGGCGTCATC GGCATCTCGC CCTATGCCGT TTACCGTCTG
CTACATGGCA ACTATCTGGT CGGCATTGCC GACACCATCA TCGTTCTGTC CACGCTGTTC
GCCGTGCTCT ATGCCTGGGT CACCCGCGAC ACGGTCAAAC CCGGTATCTA CCTGGCCGCC
GTGTTCTCCG TCGGCGCCAC GCTGATCGCC ATCAACCTGG GGGTCAACGG CCTGTTCTGG
ATCTATCCGC TGATTCTCTT CAACTTCTTC ATGGTCACCC CGCGCAAGGC CCTGTTGGCC
ACCGCCCTGG TGCTGGTCAG CCTGGTCACG CATGCCCTGC TGGTGCCCGG CAGCGTGTTC
GAGAGCGACT ACCAGATGGT CTCGTTCCTG GTCACCTGCA TGATGGCCAG CGTGCTCAGC
TTCATCTTCG CCGTGCGCAC CCGCACCCAG CGCGACCAGC TGCAACTGCT GGCGATCCAT
GACCCGCTCA CCGGCGCCCG CAACCGCCGC GCGATGAATG AAGAACTGAA GATCGCCATG
GCCAGCCATC GCCGCCACAG CGACAGCTAC GGCCTGCTGG TGATGGATCT GGACCATTTC
AAACAGATCA ACGATCGCTT CGGCCACCAT GTCGGCGATC AGGTGCTGGT GGCCTTCGTC
GAACTGATCA AGCGCTGCTC GCGCAAGGAG GATCGCCTGT TCCGTTTCGG CGGAGAGGAG
TTTCTTCTGC TGCTACCCAA TACCGAACTG CCGGGCCTGC AGGCGGCAGC ACAGAATCTG
CTCGGCCGGG TAGCACAGGA ACTGAAAAGC CCGGGCGGCG CGGTGACGGT CTCCATCGGC
GGCGCGGTGC TGCACAGCGG CGAGCACTGG GAAAGCTGGC TGCAGCGAGC CGACGAGAGC
CTCTATCGCG CCAAGAGCGA GGGACGCAAC CGCGCGGTGA TCGCCGACGG CGCGACGCCA
CTGGCGAATG TCGGCAGGCA CTGA
 
Protein sequence
MSIQTARLLK RLRNDFQLSI ITLMGLFGVI GISPYAVYRL LHGNYLVGIA DTIIVLSTLF 
AVLYAWVTRD TVKPGIYLAA VFSVGATLIA INLGVNGLFW IYPLILFNFF MVTPRKALLA
TALVLVSLVT HALLVPGSVF ESDYQMVSFL VTCMMASVLS FIFAVRTRTQ RDQLQLLAIH
DPLTGARNRR AMNEELKIAM ASHRRHSDSY GLLVMDLDHF KQINDRFGHH VGDQVLVAFV
ELIKRCSRKE DRLFRFGGEE FLLLLPNTEL PGLQAAAQNL LGRVAQELKS PGGAVTVSIG
GAVLHSGEHW ESWLQRADES LYRAKSEGRN RAVIADGATP LANVGRH