Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3185 |
Symbol | |
ID | 5106514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3521761 |
End bp | 3522804 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640504441 |
Product | diguanylate cyclase |
Protein accession | YP_001188670 |
Protein GI | 146308205 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.106755 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0939676 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATCC AGACCGCTCG CCTACTCAAG CGCCTGCGCA ACGACTTCCA GCTGTCGATC ATCACCCTGA TGGGTCTGTT CGGCGTCATC GGCATCTCGC CCTATGCCGT TTACCGTCTG CTACATGGCA ACTATCTGGT CGGCATTGCC GACACCATCA TCGTTCTGTC CACGCTGTTC GCCGTGCTCT ATGCCTGGGT CACCCGCGAC ACGGTCAAAC CCGGTATCTA CCTGGCCGCC GTGTTCTCCG TCGGCGCCAC GCTGATCGCC ATCAACCTGG GGGTCAACGG CCTGTTCTGG ATCTATCCGC TGATTCTCTT CAACTTCTTC ATGGTCACCC CGCGCAAGGC CCTGTTGGCC ACCGCCCTGG TGCTGGTCAG CCTGGTCACG CATGCCCTGC TGGTGCCCGG CAGCGTGTTC GAGAGCGACT ACCAGATGGT CTCGTTCCTG GTCACCTGCA TGATGGCCAG CGTGCTCAGC TTCATCTTCG CCGTGCGCAC CCGCACCCAG CGCGACCAGC TGCAACTGCT GGCGATCCAT GACCCGCTCA CCGGCGCCCG CAACCGCCGC GCGATGAATG AAGAACTGAA GATCGCCATG GCCAGCCATC GCCGCCACAG CGACAGCTAC GGCCTGCTGG TGATGGATCT GGACCATTTC AAACAGATCA ACGATCGCTT CGGCCACCAT GTCGGCGATC AGGTGCTGGT GGCCTTCGTC GAACTGATCA AGCGCTGCTC GCGCAAGGAG GATCGCCTGT TCCGTTTCGG CGGAGAGGAG TTTCTTCTGC TGCTACCCAA TACCGAACTG CCGGGCCTGC AGGCGGCAGC ACAGAATCTG CTCGGCCGGG TAGCACAGGA ACTGAAAAGC CCGGGCGGCG CGGTGACGGT CTCCATCGGC GGCGCGGTGC TGCACAGCGG CGAGCACTGG GAAAGCTGGC TGCAGCGAGC CGACGAGAGC CTCTATCGCG CCAAGAGCGA GGGACGCAAC CGCGCGGTGA TCGCCGACGG CGCGACGCCA CTGGCGAATG TCGGCAGGCA CTGA
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Protein sequence | MSIQTARLLK RLRNDFQLSI ITLMGLFGVI GISPYAVYRL LHGNYLVGIA DTIIVLSTLF AVLYAWVTRD TVKPGIYLAA VFSVGATLIA INLGVNGLFW IYPLILFNFF MVTPRKALLA TALVLVSLVT HALLVPGSVF ESDYQMVSFL VTCMMASVLS FIFAVRTRTQ RDQLQLLAIH DPLTGARNRR AMNEELKIAM ASHRRHSDSY GLLVMDLDHF KQINDRFGHH VGDQVLVAFV ELIKRCSRKE DRLFRFGGEE FLLLLPNTEL PGLQAAAQNL LGRVAQELKS PGGAVTVSIG GAVLHSGEHW ESWLQRADES LYRAKSEGRN RAVIADGATP LANVGRH
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