| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3172 |
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| Symbol | |
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| ID | 5106501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3510286 |
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| End bp | 3511842 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504428 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001188657 |
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| Protein GI | 146308192 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.211888 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGCG GCATTCGGCT AGCCTCCTTT CTGCTGGTGT TCATCTGCCT GTCGCTGGCC
CTGCTGACGG CCTGGCAAAT CTGGTTCTCC CGCGAGCGCG CGATACGCGA GCTGAACGTG
GCCAACCTCA ATCTGGTTCA GGCGCTGGAC AACTACACCG AGGGCGTGAT TCGCCAGTCC
GAACTGGTGT TGATCGATCT GAGCGAGCGC GTGCAAGGTG CTGACCTCGC CCCGCAGGAG
CAGGAGCGGA TAAAGACGCT GCTGCAACGG CAGACCCAGG TGCTCGGCCT GGCCAATGCC
ATTGTCGTCT ACGATGCCCA GGGCGACCGG CTGCTGGCCT CCAGCAGCGC CCCACACTCC
GGCCTCAACG CGGCCGACCG AGCCTTCTTC ATTCATCACC GCAACGATCC CTCGACGGAC
ATTTTCATCG GCCCCACGAT CAAGAGCCGC ATCACCGGCG ACTGGGTCTT CACCGTCAGC
CGCCGGCTAA ACGATGCCGA TGGTCGCTTC GCCGGAGCAG TGGCCGTCAC CCTGGGTGTC
GAGCATTTCC TGCATTTCTA CGGCGGTCTC AACCTCGGCG AACATGGCTC TATGAGCCTG
TCCAGCAGCG ATGGTCTGCT GCTGTTTCGC CAACCCTTTC GTGAGCAGGA CGTGGGCCTC
GACTGGTCCG ACTCCCCTGT GCTGCAGATC CTGCGCGAGA AAAATGAAGG CACCTCCATC
CAGACGTCGC GCATCGACGG TCTCGAGCGC CTGTATGCCT TTCGCCGCAA TGAGCACCTG
CCGCTGATCA CCGTGATCGC GGTCAGCCGT GACGAGGCCC TGGCAGCCTG GCGCCGCGAT
GCCGAGCTGT TCGCCGCGCT GATTCTGCTA CTGCTGCTGG CCATAGGCAT CATCGGCCAA
CGCCTGATTC TCGACATCCG CCGCCGCTCG CGCATGGAAC AGCAGCTGCT GAACGCAAGG
GAGGAGCTGC TCGATGCCAA TGCCCGGCTG GAGGTGCTGG CGTCGCAGGA CGCCCTGACC
GGCCTGGCCA ACCGACGCAG TTTCGACCAG ACCCTGGAGG TGGAGATCCG CCGCGCCCAG
CGCCGTGGTT CGCCGCTGTC GCTGATGCTG CTGGATATCG ACCTGTTCAA ACGCTACAAC
GACCGCTACG GTCATGTGGC CGGCGATGCC TGCCTGCGCG CGGTGGCCGA TGTGCTCAGG
CAATGCATGC GTCGCCCCGG CGATCTGGCG GCTCGCTACG GTGGCGAGGA GCTGGCGGTG
ATCCTGCCCA ACGTCGATAT CGAGGGTGCG CAGACGGTGG CCCGCACCTT CATGCAGGCC
CTGGAACAGC GCCACCTCGC CCATCAGGGC AGCCCTTTTC AGCGAGTCAC GGTGAGTGCT
GGCGTGGCCA GCCTGGTACC CGACGCCGGG GACAGCAGCG CACAAGCCCT TGCCTTGATA
CGCGCCGCCG ACCAGGCCCT GTATCGCGCC AAGAGCAATG GCCGTAACCG CCTGGAGTGC
GCCGAATCAC CGAGACAAGA CTCCAGCGGC GGTGACTCGG CAGGTCATCC GGGCTGA
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| Protein sequence | MKRGIRLASF LLVFICLSLA LLTAWQIWFS RERAIRELNV ANLNLVQALD NYTEGVIRQS
ELVLIDLSER VQGADLAPQE QERIKTLLQR QTQVLGLANA IVVYDAQGDR LLASSSAPHS
GLNAADRAFF IHHRNDPSTD IFIGPTIKSR ITGDWVFTVS RRLNDADGRF AGAVAVTLGV
EHFLHFYGGL NLGEHGSMSL SSSDGLLLFR QPFREQDVGL DWSDSPVLQI LREKNEGTSI
QTSRIDGLER LYAFRRNEHL PLITVIAVSR DEALAAWRRD AELFAALILL LLLAIGIIGQ
RLILDIRRRS RMEQQLLNAR EELLDANARL EVLASQDALT GLANRRSFDQ TLEVEIRRAQ
RRGSPLSLML LDIDLFKRYN DRYGHVAGDA CLRAVADVLR QCMRRPGDLA ARYGGEELAV
ILPNVDIEGA QTVARTFMQA LEQRHLAHQG SPFQRVTVSA GVASLVPDAG DSSAQALALI
RAADQALYRA KSNGRNRLEC AESPRQDSSG GDSAGHPG
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