| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3145 |
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| Symbol | |
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| ID | 5106474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3481108 |
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| End bp | 3482055 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504401 |
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| Product | bile acid:sodium symporter |
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| Protein accession | YP_001188630 |
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| Protein GI | 146308165 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0385] Predicted Na+-dependent transporter |
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| TIGRFAM ID | [TIGR00841] bile acid transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.142756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0139778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCAC TGATCGCCCT CAGCCGTTTC ATCGGCAACA CCTTCGCCGT CTGGGTGTTG
CTGTTCGCCG TACTGGCCTT CTTCCAGCCC GCCTGGTTCC TGCCACTGAC CGCCTGGATC
GTCCCGCTGC TCGGGCTAAT CATGTTCGGC ATGGGCCTGA CCCTCAAGGC CACGGACTTT
CAGGAAGTCG CCCGTCGCCC GCTGGCGGTG CTGCTCGGCG TGCTGGCGCA GTTCAGCATC
ATGCCGCTGC TGGCCTGGGG CCTGTGTCAG GTGTTCGCCC TGCCGGCGGA AATCGCCGTC
GGCGTGATTC TGGTCGGCTG CTGCCCGGGC GGCACCGCCT CCAACGTGAT CACCTGGTTC
GCCCGTGGCG ACCTGCCGCT GTCGGTGTCG ATCACCGCCG TCACCACCCT GCTCGCCCCG
CTGGTCACCC CGGCGCTGAT CTGGCTGCTG GCCTCGGAAT GGCTGCCGGT GTCGTTCAGC
GCCATGTTCG TTTCCATCCT GAAGATGGTG CTGCTGCCGA TCGTCCTCGG CCTGATCGCC
CAGCGCCTGC TCGGCGCGCG GGTGAAAACC GCCGTCGAGG TGCTGCCGCT GATCTCGGTG
CTGAGCATCG TCGCCATCGT CGCCGCGGTG GTGGCCGCCA GCCAGGGCAG GATCGCCGAG
TCCGGCCTGC TGATCATGGC GGTGGTGATC CTGCACAACG GCATCGGCCT GGGCCTGGGT
TACCTGGCCG GACGCCTGTT CGGCATGTCG CTGGCGCAGC GCAAGACGCT GTCCATCGAA
GTCGGCATGC AGAACTCCGG CCTCGGCGCC GCCCTGGCCA GCGCCCACTT CAGCCCGCTT
GCGGCGGTGC CCAGCGCGCT GTTCAGCGTC TGGCACAACC TGTCCGGCCC GCTGCTGGCC
ACGCTGTATC GTCGGCTCGG TCAGGATATT TCGAAAAGCT CCAGCTGA
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| Protein sequence | MQALIALSRF IGNTFAVWVL LFAVLAFFQP AWFLPLTAWI VPLLGLIMFG MGLTLKATDF
QEVARRPLAV LLGVLAQFSI MPLLAWGLCQ VFALPAEIAV GVILVGCCPG GTASNVITWF
ARGDLPLSVS ITAVTTLLAP LVTPALIWLL ASEWLPVSFS AMFVSILKMV LLPIVLGLIA
QRLLGARVKT AVEVLPLISV LSIVAIVAAV VAASQGRIAE SGLLIMAVVI LHNGIGLGLG
YLAGRLFGMS LAQRKTLSIE VGMQNSGLGA ALASAHFSPL AAVPSALFSV WHNLSGPLLA
TLYRRLGQDI SKSSS
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