| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3135 |
|---|
| Symbol | |
|---|
| ID | 5107457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3468765 |
|---|
| End bp | 3469295 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640504391 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001188620 |
|---|
| Protein GI | 146308155 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1943] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.464073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.01424 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACT ACCGCCGCGC CCGGGAGCAG GGCGCCTGCT ATTTCTTCAC CCTGGTCAGC
CACCAGCGCC GGCCGCTTCT TACCGAGGCG CCGGTGCGCG CGGCAATGCG CAGCGCCATC
GAGCAGGTGC GCCGGGGTTA TCCCTTTGCC ATCCACGGCT GGGTGCTGCT GCCCGATCAC
CTGCACTGCC TGTGGCAGCT GCCACCGGGC GATGCCGAGT TCGGCCTGCG CTGGTCGATG
ATCAAACGCC TGACCAGCCA GGCCCTGCCG CAATCCGAGG GCGTCAGCCT GAGCCGGCGT
CTGCGCCGCG AGGCGGGCTT GTGGCAACGG CGATTCTGGG AACACCGCAT CCGTGACGAA
CAGGACCTGC ACCGGCACCT GGATTACCTG CATTGGAATC CGGTGCGCCA TGGCCTGGTG
CAGCAGGTGG TGGATTGGCC CTGGTCGAGC TTCCATCGCC TGGTGCGCGA GGGCGTGTAC
CCGGCGGATT GGGGCGGGGT GGTGGAAGAC GAGGGAGCGT TTGGCGAGTA G
|
|---|
| Protein sequence | MSDYRRAREQ GACYFFTLVS HQRRPLLTEA PVRAAMRSAI EQVRRGYPFA IHGWVLLPDH
LHCLWQLPPG DAEFGLRWSM IKRLTSQALP QSEGVSLSRR LRREAGLWQR RFWEHRIRDE
QDLHRHLDYL HWNPVRHGLV QQVVDWPWSS FHRLVREGVY PADWGGVVED EGAFGE
|
|---|
| |