| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3133 |
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| Symbol | malS |
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| ID | 5107455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3465317 |
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| End bp | 3467380 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504389 |
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| Product | periplasmic alpha-amylase precursor |
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| Protein accession | YP_001188618 |
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| Protein GI | 146308153 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.21513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0265446 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCC CTTCGTTGCC GACTTCGCTC ACCACCCTGG CCTGCGCCCT GCTCTGCCAG
TTTGCCAGCG CCGAGCCACA GCTGCAGGCC TGGCTGGATC AACGGCCAGT GCCGCTGCAA
TGGAGCAACC CCGCGCCGCA GCGCTACAGC GTCGAGCTGG AGCTGAGCGC CGGCCAGCTG
CGTCTGCAGG CACCCAATGC CAGCGGCAGC GCCCAGCCGC TGGCCCTGTA CCAGCGTCAG
GACTGGCACG CGCGCAGCTC ACTCAGCCTG CAGATCGGCG AGCCCGGCCG CTATCGCCTG
CTGTTTCAGG AAGACGCCCA GCCCCATCTG CGCCTGCTGC CGCTGCGCGA GCAGGCGCCG
CGCAGCGCCT GCCGCACCTG GCAGGGCGAG GCGCTGAGCG TCGCGGTCGG CCAGGTATTC
GCCGACGGCG AGGTGCTGCG CGATGCCTAC AGCGGCCAGT TGGCCACGGT GGAAAACGGC
CGCATCGAGC TGACCCCGGC AGCGCATAGC GACGGCCTGC TCCTGCTCGA GCCAGCCGAG
CCGGCGCCAG CGCCCGCCCA CGACTGGCGC AATGCCACGG TGTATTTCGC CATCACCGAC
CGCTTCGCCA ATGGCGATAC CGGCAACGAC CGCAGCTACG GGCGCCAGCC CGACGGCGAG
CAGGAGATCG GTACCTTCCA TGGCGGCGAT CTGCGCGGCC TGACCGGCAA GCTCGACTAC
CTGCAGCAGC TGGGGGTCAA CGCACTGTGG ATCAGCGCGC CCTTCGAGCA GATCCATGGC
TGGGTCGGCG GCGGTGACAA GGGCGACTTT CGCCATTACG CCTACCACGG CTACTACGCC
CTGGACTTCA CCCGCCTGGA CGCCAACATG GGGACGGAAG ACGAGCTGCG CGAGCTGATC
GCCCAGGCTC ACGCCCGCGG CATCCGCGTG CTGTTCGACG TGGTGCTCAA CCACCCCGGC
TATTCGACCC TGGCCGACAT GCAGGTGCTC GGCTTCGGCG CGCTGCGCGG CGGCATGGAC
CAGTACCTGC CGCCGCGCTG GAGCGACTGG CAGCCGGAGA GCTTCGAGAA CCTGCACGCC
TACCACAACC TGATCGACTA CCAGCACGAC GCCTGGCGCC AGTGGTGGGG CAAGGACTGG
GTACGCGCCG ACATCGCCGA CTATGACAGC CCGCCCAGCG TGCTAGTCGA CCCGCGCCAG
GGCTCGCTGG CCTTCCTCCC CGACTTCAAG ACCGAGAGTC AGCAGCCGGT GTCCCTGCCG
CCCTTCCTGC TGCGCAAGGC CGACACCCGC GCCGTGCCAC GCGAGGGCTA CCGGGTGCGC
GACTACCTGG TGGAATGGCT GAGCTTCTGG GTGCGCGAAT TCGGCGTCGA CGGCTTTCGT
GCCGATACCG TCAAGCACGT CGAACTGGAG AGCTGGGCGG CGCTGCGCCA GGCAGCCGAC
AAGGCGCGCG CCGAGTGGTC GGCGGCCAAC CCCGATGATC CCATGAGCGG CAGCCCGTTC
TGGATGGTCG GCGAGGTGTT CGGCCACGGC CCGCAGGCCA GCGTTTACCA GGACCACGGC
TTCGACGCGC TGATCAACTT CGACTTCCAG GGCGAGCTGG CCGCCAGGGG CAGCGAGTGC
CTGCGCCAGG TCGAGGACGG CTACCGCGAC TACGCCGAGC TGCTGGCCAA CGACGCGCGG
CACAACTTCA TGAGCTACGC CTCGTCCCAC GACACCTCGC TGTTCTTCGC CGAACAGGGC
GAGCGACTGG CGCGCCAGCG CGGCCTGGCC TGTGCGCTGC TGCTGGCACC CGGCGCGGTG
CAGATCTACT ACGGCGACGA AAGCGCGCGC CCGCTCGGCC CCACGGGTTC GGACCCGCAC
CAGGGCACGC GCTCGTCGAT GAACTGGGAC GCCCAGCAGC AGGCGCCGGT CGCCGAACTG
CTGGCGCACT GGCGCCTGCT CGGCCAGTTC CGCGCGCGCC ACCCGGCCAT CGGGGCCGGC
CGCCACCAGC AGCTGTCCAG CCAGCCCTAC GCCTTCGCCC GCACCCTCGG CAAGGACCGG
GTGGTGATAG TGCAAGGGCG GTAA
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| Protein sequence | MRRPSLPTSL TTLACALLCQ FASAEPQLQA WLDQRPVPLQ WSNPAPQRYS VELELSAGQL
RLQAPNASGS AQPLALYQRQ DWHARSSLSL QIGEPGRYRL LFQEDAQPHL RLLPLREQAP
RSACRTWQGE ALSVAVGQVF ADGEVLRDAY SGQLATVENG RIELTPAAHS DGLLLLEPAE
PAPAPAHDWR NATVYFAITD RFANGDTGND RSYGRQPDGE QEIGTFHGGD LRGLTGKLDY
LQQLGVNALW ISAPFEQIHG WVGGGDKGDF RHYAYHGYYA LDFTRLDANM GTEDELRELI
AQAHARGIRV LFDVVLNHPG YSTLADMQVL GFGALRGGMD QYLPPRWSDW QPESFENLHA
YHNLIDYQHD AWRQWWGKDW VRADIADYDS PPSVLVDPRQ GSLAFLPDFK TESQQPVSLP
PFLLRKADTR AVPREGYRVR DYLVEWLSFW VREFGVDGFR ADTVKHVELE SWAALRQAAD
KARAEWSAAN PDDPMSGSPF WMVGEVFGHG PQASVYQDHG FDALINFDFQ GELAARGSEC
LRQVEDGYRD YAELLANDAR HNFMSYASSH DTSLFFAEQG ERLARQRGLA CALLLAPGAV
QIYYGDESAR PLGPTGSDPH QGTRSSMNWD AQQQAPVAEL LAHWRLLGQF RARHPAIGAG
RHQQLSSQPY AFARTLGKDR VVIVQGR
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