| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3128 |
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| Symbol | |
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| ID | 5107450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3456544 |
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| End bp | 3458172 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640504384 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001188613 |
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| Protein GI | 146308148 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.209805 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0115348 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTTA TTCGCAAGGA CTGGTGGCGC GGCGGCGTCA TCTACCAGGT CTACCCACGC
AGTTTTCTCG ACAGCAACGA CGACGGCATC GGCGATCTGC CCGGCGTGCT GGCCAAACTC
GATTACATCG CCAGCCTCAA CGTCGACGCC ATCTGGCTGT CGCCGTTCTT CACCTCGCCG
ATGAAGGATT TCGGCTACGA CGTCTCCGAC TATCGCGGCG TCGACCCGAT CTTCGGCACC
CTCGACGACT TCCGCGCGCT GGTCGCGGCC GCCCACGAGC GCGGCCTGCG CATCATCATT
GATCAGGTGC TCAACCACTG CTCCGACCAG CATCCCTGGT TCGCCGAGAG CCGTACCAGC
CGCAGCAACG ACAAGGCGGA CTGGTTCGTC TGGGCCGACC CCAACCCGGA CGGCACGCCG
CCGAACAACT GGCTGTCGGT GTTCGGCGGT TCGGCCTGGA CCTGGGAGGG CAGGCGCAAG
CAGTACTACC TGCACAACTT CCTGGCCAGC CAGCCGGACC TCAACTTCCA CTGCGAGGCG
GTGCAGCAGC AACTGCTCGA CGACATGGAG TTCTGGCTGC AGCTGGGCGT CGACGGCTTC
CGCCTGGACG CCGCCAACTT CTACTTCCAC GACCAGGCGC TGCGCAACAA CCCGCCGAAC
CTGGACATCC GCGAGGGCGG CATCGGCGTG CGCGTCGACA ACCCCTACGC CTACCAGCGC
CACCTGTACG ACAAGACCCA GCCGCAGAAC CTCGACTTCC TGCGCCGCCT GCGTGCGCTG
CTGGAGCGCT ACCCCGGCAC CGCCACGGTG GCGGAGATCG GCTGCGACGA TTCGCTACGC
ACCATGGCCG CCTACACCAG CGGCGGCGAC ACCCTGCACA TGGCCTATTC CTTCGACCTG
CTCACCGCCC AGTGCAGCCC GGCCTACATC CGCAGCACCA TCGAAGCCAT CGAGGGCGAA
CTGGGCGACG GCTGGCCCTG CTGGTCGGTG GGCAACCACG ACGTGGTGCG GGTGATGAGC
CGCTGGGCCC ATGACGGCGA GGCCACGCCG GAGCGCGGCC GTCTGCTGAT GTCGCTGCTG
CTGTCGCTGC GGGGCAGCGT CTGCCTGTAC CAGGGCGAGG AGCTCGGCCT GCCCGAGGCG
GAACTGGCCT TCGAGGATCT GGTCGACCCC TACGGCATCA CCTTCTGGCC CGAGTTCAAG
GGGCGCGACG GCTGCCGCAC GCCGATGCCC TGGGTACGCG ACGGCGTCCA TGCCGGCTTC
TCCAGCCAGC AACCCTGGCT GCCGCTGGAC GAACGCCACC GCGCCCTGGC CGTGGACGTG
CAGGAGGACG ACAGCGCCTC GATGCTCAAC AGCTACCGGC GCTTTCTCGC CTGGCGCCAG
GAGCAGCCGC TGCTGATCGA CGGCGATATC CAGGTGCGCT ACCACGACGA CGACCTGCTG
GTGTTCGAAC GGCGTCTGGG CGAGCAGGCC TGGCTGTGCC TGTTCAACCT GGGCGACCGC
GAGCGCCGCT ACGACCTGCC GCTGATGGTC GAGCCGCTGG AGGGGGTGCC GTCCAGCACG
GCCGAGTTCC TCGGCAGTTG GGTACACTTG CCGGCCCATG GGTTCGGCTT CGCCCGCCTC
CTGGGCTAG
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| Protein sequence | MAVIRKDWWR GGVIYQVYPR SFLDSNDDGI GDLPGVLAKL DYIASLNVDA IWLSPFFTSP
MKDFGYDVSD YRGVDPIFGT LDDFRALVAA AHERGLRIII DQVLNHCSDQ HPWFAESRTS
RSNDKADWFV WADPNPDGTP PNNWLSVFGG SAWTWEGRRK QYYLHNFLAS QPDLNFHCEA
VQQQLLDDME FWLQLGVDGF RLDAANFYFH DQALRNNPPN LDIREGGIGV RVDNPYAYQR
HLYDKTQPQN LDFLRRLRAL LERYPGTATV AEIGCDDSLR TMAAYTSGGD TLHMAYSFDL
LTAQCSPAYI RSTIEAIEGE LGDGWPCWSV GNHDVVRVMS RWAHDGEATP ERGRLLMSLL
LSLRGSVCLY QGEELGLPEA ELAFEDLVDP YGITFWPEFK GRDGCRTPMP WVRDGVHAGF
SSQQPWLPLD ERHRALAVDV QEDDSASMLN SYRRFLAWRQ EQPLLIDGDI QVRYHDDDLL
VFERRLGEQA WLCLFNLGDR ERRYDLPLMV EPLEGVPSST AEFLGSWVHL PAHGFGFARL
LG
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