| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3126 |
|---|
| Symbol | |
|---|
| ID | 5107448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3454299 |
|---|
| End bp | 3455210 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640504382 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001188611 |
|---|
| Protein GI | 146308146 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.221809 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0127742 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCATC TGCCATCACG CACCTGGATC CGCGCCCTGG TCGGTATCAC CGTCGCGCTC
GGCACCTTCG AAGCCACGCG CCGCTATCGG CAGTTGGCGA GCGCGCCGGC GCTGAGCGAC
ACCAGTCGCG CCCTGGGCAT CGACGGTCAT CATGTTCAGG CCGGCCCCTG GCGGCTGTTC
ACCCGCAGTG TCGGCGCTGC CGATGCACCG GTGGTGGTGC TGGTGCACGG GCTGGTCATC
TCCAGTCGCT ACATGGAGCC GCTGGCCAGG GCGCTGGCCG ACAACGGCTA CCGCGTGCTG
GCGCCGGACC TGCCGGGCTA CGGCGAGAGC GCGACTGGCA CGCCACGGCG CGTGCTGAGC
GTCGAGCAAC TGGCCGATGT GCTCGACCTC TGGCTCAGCG CCTGCGCCAT CGACAAGGCC
ACCTTCATCG GCAATTCCTA CGGTTGCCAG ATCCTCACGG CCCTGGCGGT GCGCCACCCC
CAGCGGGTGG AGCGGCTGGT GCTGCAGGGG CCGACCGTCG ACCCGGCGGC GCGCAGCCTG
TTGCCCCAGC TCTGGCGTGC TGTGCGCAAT GGCCGTCGCG AGCGTCTGCG CTCCAGTGCC
GGCATCGGTC GCATCGATTA CGCCAAGGCC GGCGTCTGGC GGGTGTTGAG CAGCATCAGG
CGCCTGCTGC ATTACCGCAT CGAGGATCAT CTCGCCGCCA TCGAGGCTCC ATGTCTGGTC
GTGCAGGGCA GTCGCGACCC GGTGGCGCCG CCGCACTGGG GCGAGGCGGT GGCCGCGCGC
TTGCCCAAAG GGCGTCTGTG CCTTGTCGAG GGCGCGACCC ACACCATGAA CTACGTGCAT
CCGCACAGCT TCGCGCAGCT GATCGACGAT TTTCTGCGCG AGGGTCGCCG CGCCACGGAG
GTGGCCCAAT GA
|
|---|
| Protein sequence | MPHLPSRTWI RALVGITVAL GTFEATRRYR QLASAPALSD TSRALGIDGH HVQAGPWRLF
TRSVGAADAP VVVLVHGLVI SSRYMEPLAR ALADNGYRVL APDLPGYGES ATGTPRRVLS
VEQLADVLDL WLSACAIDKA TFIGNSYGCQ ILTALAVRHP QRVERLVLQG PTVDPAARSL
LPQLWRAVRN GRRERLRSSA GIGRIDYAKA GVWRVLSSIR RLLHYRIEDH LAAIEAPCLV
VQGSRDPVAP PHWGEAVAAR LPKGRLCLVE GATHTMNYVH PHSFAQLIDD FLREGRRATE
VAQ
|
|---|
| |