| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3115 |
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| Symbol | |
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| ID | 5107437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3442233 |
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| End bp | 3443147 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504371 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001188600 |
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| Protein GI | 146308135 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.800389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.291709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCCGCT CCGGCCTGCG TCTCATCCCT CTGCTCGCCG CTCTCGTCTT CGGCTCAGCC
AGCGCCGCAG CAGCCGATCC GGTGGTGGTA TCGTCGAAGA TCGACACCGA GGGTGCGGTG
CTCGGCAACC TCATCGCCCT GCGCCTGGAG CGCGGTGGCG TGCCGGTGGA ACAACGCCTG
CAGCTGGGCG CCACCAACAT CGTGCGCAAG GCGCTGATCG CCGGCGAGAT CGACCTCTAC
CCCGAATACA CCGGCAACGG CGCCTTTTTC TTCGACCAGG CCGATAGCCC GGTGTGGAAG
GACGCGGCCA AGGCATATGC CACGGTCAAG CGACTCGACC GCGAGGCCCA CGATCTGGTC
TGGCTGCAAC CGGCCGACGC CAACAACACC TGGGCCATGA GCGTGCGCGG CGATCTGGCC
CGTGCCCACG GCCTGCGCAG CCTCGACGAC CTGGCGCGCT ACCTGGCCGC CGGGGGCGAC
TTCAAGTTCG CCGCCAGCGC CGAGTTCGTC GAGTCGCCCA GCGCCCTGCC GGCCTTCCAG
AAGGCCTACG GCTTCAGGCT CGAACCGGCG CAACTGGTGG TGCTCTCTGG CGGCAATACC
GCGGCCACCC TGCGCGCCGC GGCCCAGGGT ACCAATGGCG TCAACGCCGC CATGAGCTAC
GGTACCGACG GCGGCCTGGC AGCGCTGGAC CTGCAGGTCC TGAGCGACCC GCGCGCGGTG
CAGCCGGTGT ACCAGCCGGC GCCGCTGGTC CGCGCCGAGG TGCTGACCGC CTACCCGCAG
ATCGAGACGC TGCTGCGCCC GCTGTTCACC GCCCTCAGCC TGGAAACCCT GCAACGTCTG
AACGGCGAGG TGGCGGTCAA CGGCGCCGAC CCTCGCCAGG TGGCGGAAAC CTTTCTCGAC
AGCCTCGAAC AGTAA
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| Protein sequence | MSRSGLRLIP LLAALVFGSA SAAAADPVVV SSKIDTEGAV LGNLIALRLE RGGVPVEQRL
QLGATNIVRK ALIAGEIDLY PEYTGNGAFF FDQADSPVWK DAAKAYATVK RLDREAHDLV
WLQPADANNT WAMSVRGDLA RAHGLRSLDD LARYLAAGGD FKFAASAEFV ESPSALPAFQ
KAYGFRLEPA QLVVLSGGNT AATLRAAAQG TNGVNAAMSY GTDGGLAALD LQVLSDPRAV
QPVYQPAPLV RAEVLTAYPQ IETLLRPLFT ALSLETLQRL NGEVAVNGAD PRQVAETFLD
SLEQ
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