Gene Pmen_3106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3106 
Symbol 
ID5107429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3432938 
End bp3433615 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content67% 
IMG OID640504363 
Producthypothetical protein 
Protein accessionYP_001188592 
Protein GI146308127 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.562528 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCC TCACCACGTT CGCCGCTGGC CTGCTGCTCT CGGCCAACGT TTTCGCCCTG 
TCTCTTGCCG ACCTGAGCCA GAAGGACGCC AGCGGCGGCC TCAAGGATGC GCTGATCCAG
GGCGCCCAGG TGGCCGTCAA GCAGCTGGGC ACCCCCGGCG GCTTCAACAA CAACCCGGAC
GTGCGCATCG AGCTGCCGGG CAAGCTCGGC AAGGCGGCCA AGACCATGAA GATGATGGGC
ATGGGCGCCC AGGTCGAGCA GCTCGAAGCG AGCATGAACA AGGCCGCCGA GGCCGCCGTG
CCGCAGGCTC AGGCGCTGCT GGTCGATGCC GTGAAGAAGA TGACCGTGGC CGATGCCAAA
TCGATTCTCA GCGGCCCGCA GGACTCGGCC ACGCAGTACC TGAACAAGAG CAGCCGCGAG
CAGATCCGCG CCAAGTTCCT GCCCATCGTC AAGCAGGCCA CCGACCAGGT CGGTCTGGCC
CAGCAGTACA ACGCCTTCGC CGGCCAGGCC GCCAGCTTCG GCGTGGTCGA TGCCAAGAGC
AGCACGGTGG AAAACTACGT GACCGAGCAG GCGCTCGACG GCCTGTTCGA GATCATCGCC
CAGCAGGAGG CGAACATTCG CCAGAACCCG GCCGGCGCCG CCACCAGCCT GGCACAGAAG
GTGTTTGGCG CGCTCTGA
 
Protein sequence
MLRLTTFAAG LLLSANVFAL SLADLSQKDA SGGLKDALIQ GAQVAVKQLG TPGGFNNNPD 
VRIELPGKLG KAAKTMKMMG MGAQVEQLEA SMNKAAEAAV PQAQALLVDA VKKMTVADAK
SILSGPQDSA TQYLNKSSRE QIRAKFLPIV KQATDQVGLA QQYNAFAGQA ASFGVVDAKS
STVENYVTEQ ALDGLFEIIA QQEANIRQNP AGAATSLAQK VFGAL