| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3104 |
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| Symbol | |
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| ID | 5107427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3431703 |
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| End bp | 3432413 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640504361 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001188590 |
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| Protein GI | 146308125 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.329508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGAAG CGCTGGCGCT GAGCAGCCTG GGCAGCGGCT ACCGGGCGCT GGTGATCGGC
GCCAGCGGCG CCATCGGCCA GGCCTTCTGC CAGCTGCTGC GCGCCGATGC AGGTTGCGCC
CAGGTGCGCG AACTGAGCCG CGCCAGCTCA CCGGCACTCG ACCTGGAAGA CCCCGCCAGC
ATCGCCGCGG CTGCGTCAGC GCTGGCCGCA GAAGGCCCCT ACCAGCTCAT CCTGCATGCC
GCCGGGCTGC TGCATCGCCC CGGCATCGCG CCGGAAAAGA GCCTGGCCGC CATCGAAGCC
GATGCCCTGC AGGCGGTCTT TCAGGTCAAT GCCCTGGGTC CGGCGCTGGT GCTGCGCCAC
TTCCTGCCGC TGCTCGACAA ACAGGGCGCC ATGGCCATGC TCTCGGCCAA GGTCGGCAGC
ATCGGCGACA ACCGCCTCGG CGGCTGGTAC GCCTACCGCG CCTCCAAGGC GGCGCTGAAC
ATGCTGATCA AGACCGCCGC CATCGAGCTG GCACGCAGCA AACCCAAGGC GCGCCTGCTC
GCCCTGCATC CGGGCACAGT CATTTCGCCC TTGTCACACC CCTTTCGCGG CGCCTCGGCC
GCACGCCCGG CCGAGCAGGC GGCGGCCGAG ATGCTGCGGG TGATCGACAG CCTCGGCCCC
GAGCACAGCG GCAGCTTCCA TGCCTACGAC GGACAGCCCT TGCCCTGGTA G
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| Protein sequence | MSEALALSSL GSGYRALVIG ASGAIGQAFC QLLRADAGCA QVRELSRASS PALDLEDPAS
IAAAASALAA EGPYQLILHA AGLLHRPGIA PEKSLAAIEA DALQAVFQVN ALGPALVLRH
FLPLLDKQGA MAMLSAKVGS IGDNRLGGWY AYRASKAALN MLIKTAAIEL ARSKPKARLL
ALHPGTVISP LSHPFRGASA ARPAEQAAAE MLRVIDSLGP EHSGSFHAYD GQPLPW
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