| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3075 |
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| Symbol | |
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| ID | 5107398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3401123 |
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| End bp | 3401821 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640504332 |
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| Product | integron integrase |
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| Protein accession | YP_001188561 |
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| Protein GI | 146308096 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATA AACCCCGCTT GCTCGATCAG ATGCGTGATC GAATCCGCCT GAAACACTAC
TCCATCCGTA CCGAACGCGT CTATTGCGAG TGGGTGAAGC GTTTTATTCG CTTCCATCAT
TACCGTCACC CTCAGGAAAT GGGCGCTCCC GAGGTAGAGG CTTTTCTTAC CGATCTTGCC
GTGCGGCGCG ACGTGTCGGC GTCTACACAG AATCAGGCAT TGGCGGCCTT GCTGTTTCTC
TATAAGGAAG TGTTGGCACT CAATCTGCCT TGGTTGTCCG ATATCGTCCG CGCGAAGAAA
CCCCAGCGGC TGCCCGTCGT ACTGTCCATT GATGAGGTGC GGCGTGTACT GGATGAGCTC
GACGGCGAAC TCTGGTTGGT CTGTAGCCTG CTTTATGGTA CCGGTATGCG TTTGATGGAA
GCCTTGCGTC TGCGAGTCAA GGATGTTGAC TTCGCGAGGC ATGAAATCCT TATTCGCGAT
GGCAAGGGAA TGAAAGACCG CATCACCATG TTGCCGCAAC GCCTGGAACA GCCGCTGCGC
CATCATCTGG CAGTGGTACA GGCGCAGCAT CGGGTGGAGC TGGCACAAGG GCGCGGCGAT
GTTTGGCTAC CTTTTGCGCT GGCACGCAAG TATCCCAATG CGCCTTACGA GCAGGGTTGG
TCCGCGTTCA GGGGCGGTGC GTCGCCATCA TCTGGATGA
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| Protein sequence | MDDKPRLLDQ MRDRIRLKHY SIRTERVYCE WVKRFIRFHH YRHPQEMGAP EVEAFLTDLA
VRRDVSASTQ NQALAALLFL YKEVLALNLP WLSDIVRAKK PQRLPVVLSI DEVRRVLDEL
DGELWLVCSL LYGTGMRLME ALRLRVKDVD FARHEILIRD GKGMKDRITM LPQRLEQPLR
HHLAVVQAQH RVELAQGRGD VWLPFALARK YPNAPYEQGW SAFRGGASPS SG
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