| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3066 |
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| Symbol | |
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| ID | 5107389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3393035 |
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| End bp | 3394177 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504323 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001188552 |
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| Protein GI | 146308087 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.107032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAA CCCTCACCCC GACCCTGGAG CTTGCCTTCG ACCTGATCCG CCGCCCGTCC
GTCACCCCGG TCGACGAAGG CTGTCAGGAA CTGATGATGC GCCGCCTGGC CGCCTGCGGT
TTCGAGGTGG AGCGCATGCG TATCGAAGAG GTGGAGAACT TCTGGGCCAA ACGCGGTGGC
GACGGCCCGG TGCTGTGCTT CGCCGGCCAC ACCGACGTGG TGCCCACCGG CCCGCTGGAC
GCCTGGCAGT ACCAGCCGTT CGACGTACGT GTCGACGAAG AGGGCATGCT CTGCGGCCGT
GGCGCGGCGG ACATGAAAGG CAGCCTGGCG AGCATGATCG TCGCCGTCGA GCGCTTCGTC
GCTGACTATC CTAACCACAG GGGCGCCATC AGTTTCCTGA TCACCAGCGA CGAGGAAGGC
CCGGCCCAGC ACGGCACCAA GGCCGTGGTC GAACGCCTGC GCGAACGCAG CGAGCGCCTG
GACTGGTGCA TCGTCGGCGA ACCGTCGAGC ACCACCCTGC TCGGTGATGT GGTGAAGAAC
GGCCGCCGCG GCTCGCTCGG CTGCACCCTG ACCGTGTACG GCAAGCAGGG CCACGTGGCC
TACCCGCATC TGGCGAAGAA CCCGATTCAC CTGGCCGCCC CGGCACTGGC CGAACTGGCC
GCCGAGCACT GGGATCATGG CAACGACTAC TTCCCGCCGA CCAGCTTCCA GGTGTCCAAC
CTCAACTCCG GCACCGGCGC CACCAACGTC ATCCCCGGTG AACTGAAGGC GGTGTTCAAC
TTCCGCTTCT CCACCGAATC CACCGTCGAG GGCCTGCAGC AGCGCGTCAC CGCCATCCTC
GACAAGCACG GCCTGGATTA CCACCTGGAG TGGGCGCTGT CCGGCCTGCC CTTCCTCACC
CAGCCGGGCG AGCTGCTCGA CGCCGTCGCC GCCAGCATCA AGAACGTCAC CGGTCGCGAC
ACCACGCCGT CCACCAGCGG CGGCACCTCC GACGGTCGCT TCATCGCCAC TCTGGGCACC
CAGGTGGTCG AGCTCGGCCC GGTCAACGCC ACCATCCACC AGATCAACGA GCGCGTGCTG
GCCAGCGATC TCGACCTGCT GACAGAGGTG TATTACCAAA CCATGGTCAA GCTTCTCGCA
TGA
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| Protein sequence | MTATLTPTLE LAFDLIRRPS VTPVDEGCQE LMMRRLAACG FEVERMRIEE VENFWAKRGG
DGPVLCFAGH TDVVPTGPLD AWQYQPFDVR VDEEGMLCGR GAADMKGSLA SMIVAVERFV
ADYPNHRGAI SFLITSDEEG PAQHGTKAVV ERLRERSERL DWCIVGEPSS TTLLGDVVKN
GRRGSLGCTL TVYGKQGHVA YPHLAKNPIH LAAPALAELA AEHWDHGNDY FPPTSFQVSN
LNSGTGATNV IPGELKAVFN FRFSTESTVE GLQQRVTAIL DKHGLDYHLE WALSGLPFLT
QPGELLDAVA ASIKNVTGRD TTPSTSGGTS DGRFIATLGT QVVELGPVNA TIHQINERVL
ASDLDLLTEV YYQTMVKLLA
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