| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3056 |
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| Symbol | |
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| ID | 5107536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3384034 |
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| End bp | 3385230 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504313 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_001188542 |
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| Protein GI | 146308077 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.433541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCAG CCCTCGACCA GCTCCAGCCC TACCCCTTCG AGAAACTGCG CGAACTGCTC
GGCAGCGTGC ACCCGGCCGC CGACAAGGGT CCCATCGCCC TGTCCATTGG CGAGCCCAAG
CACCGCTCGC CCGACTTCGT CGGCCAGGCG CTGACCGCCA ACCTCGACAA GCTTGCCGTG
TACCCGACCA CCCTGGGCCT GCCCGAGCTG CGCCAGAGCA TCGCCGCCTG GTGCGAACGC
CGCTTCGGCG TGCCAACTGG CTGGCTGGAT GCCGCGCGTC ACGTGCTGCC GGTCAACGGC
ACCCGCGAGG CCCTGTTCGC CTTCACCCAG GCCGTGGTCG ACCGCAATGC CAAGGGCCTG
GTGGTCAGCC CCAATCCCTT CTATCAGATC TACGAAGGCG CGGCGTTCCT CGCCGGCGCC
GAACCGCATT ACCTGCCGTG CCTGGAAGCC CATGGCTTCA ACCCGGACTT CGACGCGGTG
CCGAGCGAAG TCTGGCAGCG CTGCCAGATT CTCTTCCTGT GCTCGCCGGG CAACCCCACC
GGCGCGCTGA TCCCGGTGGA GACGCTGAAG AAGCTGATCG CCCTGGCCGA CGAGCACGAC
TTCATCATCG CCGCCGACGA ATGCTACAGC GAGCTGTACT TCGACGAGGA TGCGCCACCG
CCCGGCCTGC TCAGCGCCTG CGCCGAACTG GGCCGCAGCG ACTTTGCGCG CTGCGTGGTG
TTCCACAGCC TGTCCAAGCG CTCCAACCTG CCGGGCCTGC GCTCGGGCTT CGTCGCCGGC
GACGCCGCGA TTCTCAAGGC CTTCTTGCTG TATCGCACCT ACCACGGCTG CGCCATGCCG
GTGCAGACCC AGCTGGCCAG CGTCGCCGCC TGGAACGACG AGGAACACGT GCGCGCCAAC
CGCGACCTGT ACCGCGAGAA GTTCGACGCC GTGCTGGATA TCCTCGCGCC CGTGATGGAC
GTGCAGCGCC CGGACGGCGG CTTCTACCTG TGGGCGCGCA CCCCGGGCGA CGACACCCTG
TTCACCCGCG AGCTGTTCGC CGCCGAGCAC GTCACCGTGG TGCCGGGCTC CTACCTGTCA
CGCGAGGTGA ATGGCATCAA CCCGGGCGCC GGCCGTGTGC GCATGGCGCT GGTCGCGCCG
CTGGCCGAGT GCATCGAGGC CGCCGAGCGC ATTCGCCGCT TTATCGAAAA CGCCTGA
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| Protein sequence | MNPALDQLQP YPFEKLRELL GSVHPAADKG PIALSIGEPK HRSPDFVGQA LTANLDKLAV
YPTTLGLPEL RQSIAAWCER RFGVPTGWLD AARHVLPVNG TREALFAFTQ AVVDRNAKGL
VVSPNPFYQI YEGAAFLAGA EPHYLPCLEA HGFNPDFDAV PSEVWQRCQI LFLCSPGNPT
GALIPVETLK KLIALADEHD FIIAADECYS ELYFDEDAPP PGLLSACAEL GRSDFARCVV
FHSLSKRSNL PGLRSGFVAG DAAILKAFLL YRTYHGCAMP VQTQLASVAA WNDEEHVRAN
RDLYREKFDA VLDILAPVMD VQRPDGGFYL WARTPGDDTL FTRELFAAEH VTVVPGSYLS
REVNGINPGA GRVRMALVAP LAECIEAAER IRRFIENA
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