Gene Pmen_3053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3053 
SymbolrpsB 
ID5107533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3379366 
End bp3380109 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content60% 
IMG OID640504310 
Product30S ribosomal protein S2 
Protein accessionYP_001188539 
Protein GI146308074 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0052] Ribosomal protein S2 
TIGRFAM ID[TIGR01011] ribosomal protein S2, bacterial type 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0111009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCAAG TCAACATGCG CGATATGCTG AAGGCCGGTG TGCACTTCGG CCACCAGACC 
CGTTACTGGA ACCCGAAAAT GGGCAAGTAC ATTTTCGGCG CGCGCAACAA GATTCACATC
ATCAACCTCG AAAAAACCCT GCCGATGTTC AACGACGCCC TGTCGTTCGT TGAAAAGCTG
GCTGCTGGCA AGAACAAGAT CCTGTTCGTC GGCACCAAGC GTTCCGCTGG CAAGATCGTT
CGCGAAGAAG CTGCTCGTTG CGGCTCGCCG TTCGTCGATC ACCGCTGGCT GGGCGGCATG
CTGACCAACT ACAAGACCAT CCGTGCTTCG ATCAAGCGCC TGCGCGAGCT GGAAACCCAG
TCCCAGGACG GCACCTTTGC CAAGCTGACC AAGAAAGAAG CCCTGATGCG CTCCCGTGAT
CTGGAAAAAC TGGATCGCAG CCTGGGCGGC ATCAAGGACA TGGGCGGTCT GCCGGACGCG
CTGTTCGTGA TCGACGTCGA CCACGAGCGC ATCGCCATCA CTGAAGCCAA CAAGCTGGGC
ATTCCGGTCA TCGGCGTTGT CGATACCAAC AGCAGCCCGG AAGGCGTTGA CTACATCATC
CCGGGTAACG ACGACGCCAT CCGCGCCATC CAGCTGTACA TGGGTGCCAT GGCCGACGCC
GTGATCCGTG GTCGCAGCAA CGCTGGCGGC GCGACTGAAG AGTTCGTCGA AGAAGCTCCG
GCTGCCGAGA GCGCCGAAGG CTAA
 
Protein sequence
MSQVNMRDML KAGVHFGHQT RYWNPKMGKY IFGARNKIHI INLEKTLPMF NDALSFVEKL 
AAGKNKILFV GTKRSAGKIV REEAARCGSP FVDHRWLGGM LTNYKTIRAS IKRLRELETQ
SQDGTFAKLT KKEALMRSRD LEKLDRSLGG IKDMGGLPDA LFVIDVDHER IAITEANKLG
IPVIGVVDTN SSPEGVDYII PGNDDAIRAI QLYMGAMADA VIRGRSNAGG ATEEFVEEAP
AAESAEG