| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3047 |
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| Symbol | |
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| ID | 5107527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3374131 |
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| End bp | 3375315 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640504304 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_001188533 |
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| Protein GI | 146308068 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.761137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACAG TGCAGCAGAT CACCGTACTG GGGGCGACCG GCTCCATCGG TCTGAGCACC
CTGGACGTGA TCGCGCGTCA CCCCGAGCGT TACGCGGTAT TCGCGCTCAG CGGCTTTTCC
CGGCTGGCGG AGCTGGAGAC GCTCTGCGTA CAGCATCGTC CGCGCTATGT CGTGGTGCCC
GACGCTGCCG CGGCGCACGC TCTGCAGGGC AGCCTGCGAG CGGCGGCGTT GCCCACCGAG
GTGCTGGTGG GCGAGGAGGG CCTGTGCGCC GTGGCTGGAC ATGGCGAGGT CGACTGCGTA
ATGGCGGCGA TCGTCGGTGC CGCCGGCCTG AGGCCGACCC TGGCGGCGGT GCAGGCCGGC
AAGAAAGTGC TGCTGGCCAA CAAGGAGGCG TTGGTGATGT CCGGCGCCCT GTTTATGCAG
GCGGTGCGCG AGAGTGGCGC CACCTTGCTG CCGATCGATA GCGAGCACAA CGCCATTTTC
CAGTGTCTGC CGGGCGACTA CGGCCGCGGG CTGCAGGCGG TCGGCGTGCG TCGGGTGCTG
CTCACCGCTT CCGGCGGTCC CTTTCGCGAA ACGCCGCTGG CCGAGCTGGA GCGTGTCACG
CCCGAGCAGG CCTGTGCACA TCCCAACTGG TCGATGGGGC GCAAGATCTC CGTGGACTCG
GCGAGCATGA TGAACAAGGG GCTGGAGCTG ATCGAAGCCT GCTGGCTGTT CGATGCGCGT
CCCGAGCAGA TCGAGGTGGT CATCCATCGG CAGAGCGTGA TTCATTCGCT GGTCGATTAC
GTCGACGGTT CGGTGCTGGC GCAGTTGGGC AACCCGGACA TGCGCACGCC CATCGCCCAT
GCCCTGGCCT GGCCGCAGCG TATCGATTCG GGGGTGTCGC CCCTGGATCT GTTTGCCATC
GGTCGCCTGG ATTTCGAGCG CCCCGACGAG CAGCGCTTTC CCTGTCTTCG CCTGGCGCGC
GAGGCGGCGC AGGTCGGCGG CAGCGCTCCG GCGATGCTCA ACGCGGCCAA CGAGGTCGCG
GTCGACGCCT TTCTGCAGCG CCGCATCCGC TTCAGCGATA TCGCGCGTAT GATTGAGTTC
GTGTTGAACG CGGAGTCGGC GCGGGCAGTC GAAGCGCTCG ATGCGGTCTT CGAGGCCGAT
CGCCGGGCGC GCGCCCTGGC TGGTGAATGG CTCGCCCGGC ATTGA
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| Protein sequence | MSTVQQITVL GATGSIGLST LDVIARHPER YAVFALSGFS RLAELETLCV QHRPRYVVVP
DAAAAHALQG SLRAAALPTE VLVGEEGLCA VAGHGEVDCV MAAIVGAAGL RPTLAAVQAG
KKVLLANKEA LVMSGALFMQ AVRESGATLL PIDSEHNAIF QCLPGDYGRG LQAVGVRRVL
LTASGGPFRE TPLAELERVT PEQACAHPNW SMGRKISVDS ASMMNKGLEL IEACWLFDAR
PEQIEVVIHR QSVIHSLVDY VDGSVLAQLG NPDMRTPIAH ALAWPQRIDS GVSPLDLFAI
GRLDFERPDE QRFPCLRLAR EAAQVGGSAP AMLNAANEVA VDAFLQRRIR FSDIARMIEF
VLNAESARAV EALDAVFEAD RRARALAGEW LARH
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