| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3038 |
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| Symbol | dnaE |
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| ID | 5107518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3362079 |
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| End bp | 3365609 |
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| Gene Length | 3531 bp |
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| Protein Length | 1176 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504295 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001188524 |
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| Protein GI | 146308059 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.117325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAG CTTTCGTCCA CCTGCGTCTG CACACCGAAT ACTCCCTGGT CGATGGCCTG
GTGCGGGTCA AACCGCTGAT CAAGGCCGTG GCCGGGGCCG GCATGCCGGC GGTTGCGGTC
ACCGACATGA GCAACATGTG CTCGCTGGTG AAGTTCTACA AGACGGCCAT GGGCGCCGGG
GTCAAGCCGA TCTGCGGCGC CGATATCTGG ATGGCCAGCG CCGAGGAAGA CGGCCCGCTG
ACGCGCCTGA CCTTGCTGGC GATGAACCCC AAGGGCTATC GCAACCTCAC CGAGCTGATT
TCCCGCGGCT GGGCCGAGGG ACAGAGCAAC GACCTGGTGA TCATCCAGCG TGACTGGGTC
AAGGACGCGG CCGAAGGCCT GATCGCGCTG TCCGGCGCGC GCGAAGGCGA AGTCGGCCTG
GCGTTGCTGG CCGGTGACGA AGCCCTGGCG GAAACGCGCC TGCGCGAGTG GATGGCGGTG
TTCCCGGACC GCTTCTATCT GGAGGTGCAG CGCACCAGCC GTGTCGGTGA TGAGGAATAC
CTGCACGCCG CCGTGTCCCT GGCCGACCGC GTCGAGGCGC CGCTGGTGGC GACCAACGAC
GTGCGCTTCA TCAAGCAGGA CGACTTCGAG GCGCACGAAA CCCGCGTCTG CATCGGCGAG
GGCCGTACCC TGGATGACCC GCGCCGGCCG CGGCATTACT CCGACCAGCA GTACCTCAAG
ACCCCGGCGG AAATGTGGGA GCTGTTCTCC GATCTGCCGG AAGCCCTGGA AAACACCGTC
GAGATCGCCA AGCGCTGCAA TATCGATGTG CAGCTGGGCA AGTACTTCCT GCCGGACTTC
CCCACGCCCA ACGGCATGGG CATCGACGAC TACCTGCGTC ATGCCTCCTT CGAGGGCCTG
GAGGAGCGCC TGCAGGTCCT GCTGCCCAAG GACACGCCGG ATTACGAGGC GAAGAAGCAG
GTCTACGTCG ACCGCCTCAA CTTCGAGCTG GACATCATCA TCCAGATGGG TTTCCCCGGT
TACTTCCTGA TCGTGATGGA CTTCATCCAG TGGGCCAAGA ACAACGGCGT GCCGGTCGGC
CCGGGCCGTG GTTCGGGTGC CGGCTCGCTG GTGGCCTATG TGCTGAAGAT CACCGACCTG
GATCCCCTGG CCTACGACCT GCTGTTCGAA CGCTTCCTCA ACCCCGAGCG GATTTCCATG
CCCGACTTCG ACGTCGACTT CTGCATGGAC GGCCGCGACC GGGTGATCGA CTACGTGGCC
GAGAAATACG GGCGTAACGC GGTCAGCCAG ATCATCACTT TCGGCTCCAT GGCGGCCAAG
GCGGTGGTGC GCGACGTGGC GCGGGCGCAG GGCAAGTCCT ACGGCCTGGC CGATCGCCTG
TCGAAGATGA TCCCCTTCGA AGTGGGCATG ACCCTGGAGA AGGCCTACGA GATGGAGGAG
CCGCTGCGCG AGTTCCTCAA GAACGACGAG GAAGCCCAGG AGATCTGGGA CATGTCGCTC
AAGCTCGAAG GCATCGTGCG CGGCACCGGC AAGCACGCCG GCGGCGTGGT GATCGCACCG
ACCAAGCTCA CCGACTTCTC GCCGATCGCA TGTGACGAGG AGGGCGGCGG CCTGGTGACC
CAGTTCGACA AGGACGACGT CGAGCAGGCC GGCCTGGTCA AGTTCGACTT CCTCGGTCTG
CGCACCCTGA CCATCATCAA GTGGGCGATG GAAACCATCC ACCGCATCCA GAAACGCGAC
GGCGCCGCGG ACGAGGACTT GGTCAACATC GACTTCATCC CGCTGGATGA CAAGAAAACC
TACGACATGC TGCAGAAGGC GGAGACCACC GCGGTCTTCC AGCTCGAATC GCGCGGCATG
AAGGAGCTGA TCAAGAAGCT CAAGCCCGAC TGTCTGGAAG ACATGATCGC ACTGGTGGCG
CTGTTCCGTC CCGGCCCGCT GCAGTCCGGC ATGGTGGACG ACTTCATCAA CCGTAAGCAC
GGCCGCGCCG AGCTGTCCTA TCCGCACCCG GATTACCAGT ACGCCGGCCT GGAGCCGGTG
CTCAAGCCCA CCTATGGCGT CATCCTGTAC CAGGAGCAGG TGATGCAGAT CGCTCAGGTG
ATGGCTGGCT ACACCCTCGG CGGTGCAGAC ATGCTGCGTC GCGCCATGGG CAAGAAGAAG
CCCGAGGAGA TGGCCAAGCA GCGCGGCGGC TTCATTGAAG GTTGTGCCAA CAACGGCATC
GATGCCGACC TGGCCGGCAA CATCTTCGAC CTGGTGGAAA AGTTCGCCGG TTACGGCTTC
AACAAGTCGC ACTCCGCTGC CTATGGCCTG GTGTCGTATC AGACTGCCTG GCTCAAGGCG
CATTACCCGG CGCCGTTCAT GGCCGCGGTG CTGTCGGCGG ATATGCACAA CACCGACAAG
GTGGTGATCC TGGTGGAAGA GTGCCGCAAC ATGAAGTTGC GCATCGATCC GCCGGACGTG
AACGTCTCCG AATTCAAGTT CACCGTCAAC GACGACGGCC GCATCGTCTA CGGCCTCGGT
GCGGTCAAGG GGGTGGGCGA GGGGCCGGTG GAGGCCATCG TCGAATGCCG CGCCGAGGGC
GGGCCGTTCA AGGACCTGTT CGACTTCTGC AACCGCGTCG ACCTCAAGCG CATCAACAAG
CGCACCCTCG AAGCGCTGAT CCGCAGCGGC GCGCTGGATC GCCTCGGCCC CTACTACCAG
GACGAGCTCA AGGCCTACCA GGCCAGCGTC GACAAGAACC GCGCGGTGTT GCTGGCATCC
ATGGAAGAGG CCGTGCAGTC CGCCGAGCAG ACCGCGCGCA GCGCCGAGAG CGGCCATATG
GACCTGTTCG GCGGCCTGTT CGCCGAGCCC GAGGCGGATG TCTATGCCAA CCACCGCAAG
GCCCGCGAAC TGCCGATCAA GGAACGTCTG AAGGGGGAGA AGGACACCCT GGGCATCTAC
CTGTCCGGCC ACCCCATCGA CGAATACGAA GGCGAGATTC GCCGCTTCGC CCGCCAGCGC
ATCGTCGAGC TCAAGCCCGC GCGCGACACC CAGACCATCG CCGGGATGAT CGTCAACCTG
CGGGTGATGA AGAACAAGAA GGGCGACAAG ATGGGCTTTA TCACCCTGGA CGACCGCTCC
GGGAGGATCG AGGCTTCGTT GTTCGCCGAT GCCTTCGCCA GTAACCAGGC GCTGCTGCAG
AACGATGCGC TGGTGGTGGT CGAAGGCGAA GTCAGCAATG ACGACTTCTC CGGTGGCCTG
CGTCTGCGCG CCAAGCGCGT GATGAGCCTG GAAGAGGCGC GGACCGGTCT GGCCGACAGC
CTGCGCGTGA GGGTCGCCAG CGAAGCGCTC AAGGGCGATC GCCTGCGCTG GCTGGCCGAG
TTGTGCAGCA AGCACAGGGG CGCCTGCCCG GTGACCGTCG ACTACAGTGG CGATGAGGCA
CGCGCCTTGC TTCAATTCGG CGAGGCCTGG CGAATCGACC CGGCCGACAC TTTGATTCAG
GCATTGCGTG ACCAGTTCGG GCGCGACAAC GTCTTTTTGC ACTACCGCTG A
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| Protein sequence | MTQAFVHLRL HTEYSLVDGL VRVKPLIKAV AGAGMPAVAV TDMSNMCSLV KFYKTAMGAG
VKPICGADIW MASAEEDGPL TRLTLLAMNP KGYRNLTELI SRGWAEGQSN DLVIIQRDWV
KDAAEGLIAL SGAREGEVGL ALLAGDEALA ETRLREWMAV FPDRFYLEVQ RTSRVGDEEY
LHAAVSLADR VEAPLVATND VRFIKQDDFE AHETRVCIGE GRTLDDPRRP RHYSDQQYLK
TPAEMWELFS DLPEALENTV EIAKRCNIDV QLGKYFLPDF PTPNGMGIDD YLRHASFEGL
EERLQVLLPK DTPDYEAKKQ VYVDRLNFEL DIIIQMGFPG YFLIVMDFIQ WAKNNGVPVG
PGRGSGAGSL VAYVLKITDL DPLAYDLLFE RFLNPERISM PDFDVDFCMD GRDRVIDYVA
EKYGRNAVSQ IITFGSMAAK AVVRDVARAQ GKSYGLADRL SKMIPFEVGM TLEKAYEMEE
PLREFLKNDE EAQEIWDMSL KLEGIVRGTG KHAGGVVIAP TKLTDFSPIA CDEEGGGLVT
QFDKDDVEQA GLVKFDFLGL RTLTIIKWAM ETIHRIQKRD GAADEDLVNI DFIPLDDKKT
YDMLQKAETT AVFQLESRGM KELIKKLKPD CLEDMIALVA LFRPGPLQSG MVDDFINRKH
GRAELSYPHP DYQYAGLEPV LKPTYGVILY QEQVMQIAQV MAGYTLGGAD MLRRAMGKKK
PEEMAKQRGG FIEGCANNGI DADLAGNIFD LVEKFAGYGF NKSHSAAYGL VSYQTAWLKA
HYPAPFMAAV LSADMHNTDK VVILVEECRN MKLRIDPPDV NVSEFKFTVN DDGRIVYGLG
AVKGVGEGPV EAIVECRAEG GPFKDLFDFC NRVDLKRINK RTLEALIRSG ALDRLGPYYQ
DELKAYQASV DKNRAVLLAS MEEAVQSAEQ TARSAESGHM DLFGGLFAEP EADVYANHRK
ARELPIKERL KGEKDTLGIY LSGHPIDEYE GEIRRFARQR IVELKPARDT QTIAGMIVNL
RVMKNKKGDK MGFITLDDRS GRIEASLFAD AFASNQALLQ NDALVVVEGE VSNDDFSGGL
RLRAKRVMSL EEARTGLADS LRVRVASEAL KGDRLRWLAE LCSKHRGACP VTVDYSGDEA
RALLQFGEAW RIDPADTLIQ ALRDQFGRDN VFLHYR
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