| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3031 |
|---|
| Symbol | ispD |
|---|
| ID | 5107511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3354312 |
|---|
| End bp | 3355019 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640504288 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001188517 |
|---|
| Protein GI | 146308052 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.00237219 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA AATTCTGGCT GGTGGTCCCG GCCGCCGGCG TCGGTGCGCG AATGGCCGCC
GATCGGCCCA AGCAGTACCT GCAAGTCGGC GGGCGCTGCA TCATCGAACA CACCCTCGAC
TGTTTTCTCG ATCATCCCGA CCTGTTGGGC GCCGTGGTGT GCCTGGCTGT GGACGACCCC
TACTGGCCGC AACTGGCAGT AGCCAGTGAT CCGCGCGTAA GGCGTGCGCC AGGCGGGCGT
GAGCGCGCCG ACTCGGTACT GGCGGGGCTC GATGCGTTGC AGGCGGCCGG CGCAGGTGAA
CAAGACTGGG TGCTGGTGCA CGATGCAGCG CGGCCCAATC TGGCGCGCGA AGATCTGCAA
CGGTTGCTGG CCGTTCTGGC GGACGACCCG GTCGGCGGCC TGCTCGCGGT GCCGGTGCGT
GACACCCTCA AGCGTGCCGA CGCGGATGGG CGGGTGGCGC AAACCGTCGA TCGTAGCCAG
ATCTGGCAGG CCTATACGCC CCAGATGTTT CGCCTCGGGG CGCTGAGCCA GGCGCTGCGT
GGCGCGCTGG CGGCAGGCGT GCCGATCACC GATGAGGCCT CCGCGCTGGA GTGGTGCGGG
CAATCATCGC GTCTGGTGGA GGGGCGGGCG GACAATCTCA AGATCACCCG CCCCGAGGAC
CTGGCCTGGT TACGCCAGGC CTGGGTCGAA CGCGACCGGC AGCGCTGA
|
|---|
| Protein sequence | MSTKFWLVVP AAGVGARMAA DRPKQYLQVG GRCIIEHTLD CFLDHPDLLG AVVCLAVDDP
YWPQLAVASD PRVRRAPGGR ERADSVLAGL DALQAAGAGE QDWVLVHDAA RPNLAREDLQ
RLLAVLADDP VGGLLAVPVR DTLKRADADG RVAQTVDRSQ IWQAYTPQMF RLGALSQALR
GALAAGVPIT DEASALEWCG QSSRLVEGRA DNLKITRPED LAWLRQAWVE RDRQR
|
|---|
| |