| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3026 |
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| Symbol | ispF |
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| ID | 5107506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3350144 |
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| End bp | 3350617 |
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| Gene Length | 474 bp |
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| Protein Length | 157 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504283 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001188512 |
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| Protein GI | 146308047 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00012276 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTATCG GTCATGGCTA TGACGTACAC CGCTTCGGCG AAGGCGATTT CATCACCCTC
GGCGGCGTAC GGATTCCCCA TAAATTCGGT CTTGTCGCTC ATTCCGACGG CGACGTGCTG
CTGCACGCGC TGAGCGATGC CTTGCTCGGT GCGGTGGCGC TGGGCGATAT CGGCAAGCAC
TTCCCCGATA CCGATCCGAC CTTCAAGGGC GCCGACAGCC GCGCCCTGCT GCGCCATGTG
ATGAGCCTGG TGCGGGGCAA GGGCTACGCT GTGGGCAATG TCGACGCCAC CATCATCGCC
CAGGCGCCGA AGATGGCGCC GCATATCCAG AGCATGCGCG AGCGCATTGC CGAAGACCTT
GGCGTCGAGC TGGATCAGGT CAACGTCAAG GCTACGACCA CCGAGAAGCT GGGCTTCACC
GGGCGTGAGG AAGGTATTGC GGTGCACGCC GTGGCCTTGC TGGTCAAGGC ATGA
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| Protein sequence | MRIGHGYDVH RFGEGDFITL GGVRIPHKFG LVAHSDGDVL LHALSDALLG AVALGDIGKH
FPDTDPTFKG ADSRALLRHV MSLVRGKGYA VGNVDATIIA QAPKMAPHIQ SMRERIAEDL
GVELDQVNVK ATTTEKLGFT GREEGIAVHA VALLVKA
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