| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3020 |
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| Symbol | |
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| ID | 5107500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3344674 |
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| End bp | 3345681 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640504277 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_001188506 |
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| Protein GI | 146308041 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00000209414 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTCTCA CCAAAAAAGA AGCGCCGGAG TTTGACGTCG ACGATGAACT GCTCCTCATG
GAGCCAGGCA TCGTTTTGGG CGAGGTTCAG AGCGATGAGG TGGAAACACC GGTCGCGCGC
GCCAAGGCCA AGCACGCCAC CCCCTCCAAG CAGCACAAGT ACATCGACTA CACCCGGGCG
CTAGACGCCA CTCAGCTGTA CCTCAACGAA ATCGGTTTCT CCCCCCTGCT GACTCCCGAG
GAGGAAGTGC ACTTCGCGCG TCTGGCGCAG AAGGGCGATC CTGCCGGGCG CAAGCGCATG
ATCGAAAGCA ACCTGCGCCT GGTGGTGAAG ATTGCTCGGC GTTACGTCAA TCGCGGCCTT
TCCCTGCTCG ACCTGATCGA GGAGGGCAAT CTGGGCTTGA TCCGCGCCGT GGAAAAATTC
GATCCGGAGC GGGGGTTCCG TTTTTCGACC TATGCGACCT GGTGGATCCG CCAGACCATC
GAACGGGCCA TCATGAACCA GACGCGAACC ATCCGTTTGC CGATTCATGT GGTCAAGGAG
CTCAACGTCT ACCTGCGTGC GGCTCGCGAA CTGACCCAGA AGCTCGACCA CGAGCCCTCT
GCGGAAGAAA TTGCCAACCT GCTGGAAAAA CCGGTGGGCG AGGTCAAGCG CATGCTCGGC
CTCAACGAGC GGGTGTCCTC GGTGGACGTC TCGCTCGGTC CTGACTCGGA CAAGACCCTG
CTCGATACCC TGACCGATGA TCGACCGACC GATCCCTGCG AGCTGTTGCA GGACGATGAT
CTGTCGCAAA GCATCGATCA GTGGCTGTCG GACCTGACTG ACAAGCAGCG AGAGGTCGTC
GTGCGCCGCT TCGGTCTGCG CGGGCACGAA AGCTCTACCC TGGAAGAAGT AGGGCAGGAG
ATCGGTCTGA CGCGCGAGCG TGTGCGGCAG ATCCAGGTCG AGGCGCTCAA GCGTCTGCGC
GAAATTCTTG AAAAGAATGG CCTGTCCAGC GATGCGTTGT TCCAGTAG
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| Protein sequence | MALTKKEAPE FDVDDELLLM EPGIVLGEVQ SDEVETPVAR AKAKHATPSK QHKYIDYTRA
LDATQLYLNE IGFSPLLTPE EEVHFARLAQ KGDPAGRKRM IESNLRLVVK IARRYVNRGL
SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE
LNVYLRAARE LTQKLDHEPS AEEIANLLEK PVGEVKRMLG LNERVSSVDV SLGPDSDKTL
LDTLTDDRPT DPCELLQDDD LSQSIDQWLS DLTDKQREVV VRRFGLRGHE SSTLEEVGQE
IGLTRERVRQ IQVEALKRLR EILEKNGLSS DALFQ
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