Gene Pmen_3018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3018 
Symbol 
ID5107281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3341166 
End bp3342467 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content53% 
IMG OID640504275 
Producttransposase, IS204/IS1001/IS1096/IS1165 family protein 
Protein accessionYP_001188504 
Protein GI146308039 
COG category[L] Replication, recombination and repair 
COG ID[COG3464] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0000000260975 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAACAATC TTACCTTTTC TAGCCCTGAT CTTTCCAGCT TTTGCCAACT GAATAACCTC 
GGCCTGACTG CCACTGGACA ACATCTTTGT GCAGAGCGCG CCGTCATCGA ATGTCGTTTA
ACCAAAGCAC CCGAGCCATG CCCCAAGTGC GGGGCTGCTG GTGTTTCACG CGGTACTGTC
GATAGGCATC TTGCTCACAC ACCTTACGGA CAACGACCAA CCAGATTGCT GCTGCGTATC
CGTCGCTGGC GTTGTGCTTG CGGCTGTTTC TGGCATGAAG ATACAAACAG TGCAGCACCT
CCACGTTCAA AGCTTTCATA TGGGGCGATA CGCTGGGCAT TAGCTGCCAT CGTGCTGGAT
CATCTGTCGG TATCTCGTGT TGCGAGCCAG CTTGATGTTG CATGGCACAC CGCTAATAAT
GCCATTATCA ACGAAGGACG GCGCCTGCTT TTTAATGACT CGACACGTTT TGACGGTGTG
ACCGTGCTGG GCGTGGATGA GCATGTTTGG CGACATACAC GCTGTGGTGA CAAGTACGTC
ACCATCGTGG TTGACCTTAC GCCCGTGCGT AACAAAAACG GGCCGGCCCG CTTGCTCGAT
GTGCTGGAAG GCCGCTCCAA ACAAGCCTTT AAGCAATGGC TACAGAGTCG CCCCAAATCG
TGGCGTGACC AGATCGAAAG CATTGCCATG GACGGTTTTA CGGGGTTTAA ATCTGCAGCG
CAAGAAGCCC TGCCTCAAGC CCAAACCGTG CTGGATCCTT TCCATGTCGT GCGCTGGGCA
AGCAACATGC TGGATGAATG CCGCCGGCGT GTGCAACACG ACATCCTGGG CCGCAGAGGG
CGTAAAAATG ACCCGCTCTA CAAAAGCCGT CGAACGCTAC TGACTCGGAT CAGCTACCTG
TCTGACGCCA ACAAAAAGCA ACTGTTCCAG CTGTTTGCAG ATGAGCACCA CCTCGAAGTG
GATTGCACCT GGAGCATGTA CCAACGGGTG GTCAGCGCCT ACAACGAGCC GGATCGAAAA
CGTGGTAAAA AACTCATGGA AGAGGTCATA AATATCATTA CAGCCAGCGA CTTGCCCAAA
GCGCTCATCG AGGTGAAAGG CTTGGGGGAA ACGCTGAAAA AATACGCTGA GAGCATCCTT
GCCTACTTCG ACCGGCCAGG AACCAGCAAC GGTCCAACAG AAGCTATCAA CGGGCGACTT
GAGCACTTAC GAGGTACCGC CTTGGGCTTT AGAAATTTAA CCAATTACAT AGCCAGGTGC
TTGCTGAAGT CAGGAGGGTT TAGAAATCAG CTACACCCTT AA
 
Protein sequence
MNNLTFSSPD LSSFCQLNNL GLTATGQHLC AERAVIECRL TKAPEPCPKC GAAGVSRGTV 
DRHLAHTPYG QRPTRLLLRI RRWRCACGCF WHEDTNSAAP PRSKLSYGAI RWALAAIVLD
HLSVSRVASQ LDVAWHTANN AIINEGRRLL FNDSTRFDGV TVLGVDEHVW RHTRCGDKYV
TIVVDLTPVR NKNGPARLLD VLEGRSKQAF KQWLQSRPKS WRDQIESIAM DGFTGFKSAA
QEALPQAQTV LDPFHVVRWA SNMLDECRRR VQHDILGRRG RKNDPLYKSR RTLLTRISYL
SDANKKQLFQ LFADEHHLEV DCTWSMYQRV VSAYNEPDRK RGKKLMEEVI NIITASDLPK
ALIEVKGLGE TLKKYAESIL AYFDRPGTSN GPTEAINGRL EHLRGTALGF RNLTNYIARC
LLKSGGFRNQ LHP