| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3015 |
|---|
| Symbol | recA |
|---|
| ID | 5107496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3338024 |
|---|
| End bp | 3339067 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504273 |
|---|
| Product | recombinase A |
|---|
| Protein accession | YP_001188502 |
|---|
| Protein GI | 146308037 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0468] RecA/RadA recombinase |
|---|
| TIGRFAM ID | [TIGR02012] protein RecA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.514179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000000000973321 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGA ACAAGAAGCG CGCCTTGGCG GCTGCCCTGG GCCAGATCGA GAAGCAGTTC
GGCAAGGGCG CGGTGATGCG CATGGGCGAC CATGAGCGTC AGGCCATTCC GGCCATCTCC
ACCGGTTCGC TGGGGCTGGA CATCGCCCTC GGCATCGGCG GCCTGCCGAA GGGCCGTATC
GTCGAAATCT ACGGGCCGGA ATCCTCCGGT AAGACCACCC TGACCCTGTC GGTGATCGCC
GAGGCGCAGA AGAACGGCGC CACCTGTGCC TTCGTCGACG CCGAGCACGC GCTGGATCCC
GATTACGCCG GCAAGCTCGG CGTCAACGTC GACGACCTGC TGGTGTCGCA GCCGGACACC
GGCGAGCAGG CACTGGAAAT CACCGACATG CTGGTGCGCT CCAACGCCAT CGACGTGATC
ATCGTCGACT CCGTGGCCGC CCTGGTGCCC AAAGCGGAGA TCGAAGGCGA GATGGGCGAC
ATGCACGTCG GCCTGCAGGC GCGCCTGATG AGCCAGGCGC TGCGCAAGAT CACCGGCAAC
ATCAAGAATG CCAACTGCCT GGTGATCTTC ATCAACCAGA TCCGCATGAA GATCGGCGTG
ATGTTCGGCA GTCCGGAAAC CACCACCGGC GGTAACGCGC TGAAGTTCTA CTCCTCGGTT
CGTCTGGACA TCCGCCGCAC CGGCGCGGTC AAGGAAGGCG AGGAAGTGGT CGGCAGCGAG
ACCCGCGTGA AGATCGTCAA GAACAAGGTG GCCCCGCCTT TCCGCCAGGC CGAGTTCCAG
ATCCTCTACG GCAAGGGCAT CTACCGCAAC GGCGAGATCA TCGACCTGGG CGTGCAGCAG
GGCCTGGTCG AGAAATCCGG CGCCTGGTAC AGCTACCAGG GCAACAAGAT CGGCCAGGGC
AAGGCCAATG CCGCCAAGTT CCTGGAAGAC AACCCGGCGG TGGCCCGCGA AATCGAAGGC
CAGATCCGCG AGAAGCTGCT GGTCAGCGGT GCGCCGGTCA AAGCCGCGGC GGACGAGCTG
GCTGACGCCG AAGTCGACTT CTAA
|
|---|
| Protein sequence | MDENKKRALA AALGQIEKQF GKGAVMRMGD HERQAIPAIS TGSLGLDIAL GIGGLPKGRI
VEIYGPESSG KTTLTLSVIA EAQKNGATCA FVDAEHALDP DYAGKLGVNV DDLLVSQPDT
GEQALEITDM LVRSNAIDVI IVDSVAALVP KAEIEGEMGD MHVGLQARLM SQALRKITGN
IKNANCLVIF INQIRMKIGV MFGSPETTTG GNALKFYSSV RLDIRRTGAV KEGEEVVGSE
TRVKIVKNKV APPFRQAEFQ ILYGKGIYRN GEIIDLGVQQ GLVEKSGAWY SYQGNKIGQG
KANAAKFLED NPAVAREIEG QIREKLLVSG APVKAAADEL ADAEVDF
|
|---|
| |