| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3011 |
|---|
| Symbol | |
|---|
| ID | 5107492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3335121 |
|---|
| End bp | 3336143 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504269 |
|---|
| Product | dihydroorotate dehydrogenase 2 |
|---|
| Protein accession | YP_001188498 |
|---|
| Protein GI | 146308033 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01036] dihydroorotate dehydrogenase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000000000990874 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTACTCCC TGGCCCGCGA GCTGCTGTTC AAACTGTCCC CGGAAACCTC CCACGAGCTG
TCCATCGACC TGATCGGTGC CGGCGGCCGC CTGGGGCTGA ACGGCTTGCT GACGAAAGCG
CCGGCAAGCT TGCCGACCAG CGTCATGGGG CTGCAGTTCG CCAATCCGGT CGGTCTGGCG
GCCGGTCTGG ACAAGAACGG CGATGCCATC GACGGGTTTG CCCAGCTGGG TTTCGGCTTC
GTCGAGATCG GTACCGTGAC TCCGCGTCCG CAGCCGGGCA ACCCCAAGCC ACGCTTGTTC
CGTCTGCCGC AGGCCGAGGC GGTGATCAAC CGCATGGGCT TCAACAACCT CGGTGTCGAT
CATCTGCTGG AACGCGTGAA GGCTGCGAAG TACCAAGGCG TGCTGGGTAT CAACATCGGC
AAGAATTTCG ACACGCCGGT CGAGCGGGCA GTGGACGACT ATCTGACCTG CCTGGACAAG
GTCTATGCCC ACGCCAGCTA TGTCACGGTC AACGTCAGTT CGCCGAACAC GCCGGGGCTG
CGCAGCCTGC AGTTCGGCGA TTCGCTCAAG GAGCTCCTCG AGGCGCTGCG CCGGCGCCAG
GAGGATCTGA CCCAGGAGCA TGGCAAGCGC GTGCCGCTGG CCATCAAGAT CGCCCCGGAC
ATGAGCGACG AGGAGACCGC GTTGGTCGCG TCTGCGCTGT TGGGCGCGGA TATGGATGCT
GTCATCGCCA CCAATACCAC GCTCAGTCGC GAAGGCGTCG AGGGTCTGGC CCACGCCGAC
GAGGCTGGCG GTCTCTCCGG CTCGCCGGTA CGCGACAAGA GCACGCATAT CGTCAAGGTA
CTGGCCGGTG AGCTGGGGGG GCGTCTGCCC ATCATTGCCG TCGGCGGTAT CACCGAAGGT
CGGCATGCGG CGGAGAAGAT TGCCGCTGGG GCGAGTCTGG TGCAGATCTA TTCGGGCTTC
ATCTACAAGG GACCGGCGCT GATCCGCGAG GCGGTGGATG CCATTGCGGC ATTGCGCAAA
TAA
|
|---|
| Protein sequence | MYSLARELLF KLSPETSHEL SIDLIGAGGR LGLNGLLTKA PASLPTSVMG LQFANPVGLA
AGLDKNGDAI DGFAQLGFGF VEIGTVTPRP QPGNPKPRLF RLPQAEAVIN RMGFNNLGVD
HLLERVKAAK YQGVLGINIG KNFDTPVERA VDDYLTCLDK VYAHASYVTV NVSSPNTPGL
RSLQFGDSLK ELLEALRRRQ EDLTQEHGKR VPLAIKIAPD MSDEETALVA SALLGADMDA
VIATNTTLSR EGVEGLAHAD EAGGLSGSPV RDKSTHIVKV LAGELGGRLP IIAVGGITEG
RHAAEKIAAG ASLVQIYSGF IYKGPALIRE AVDAIAALRK
|
|---|
| |