| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3009 |
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| Symbol | rlmL |
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| ID | 5107490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3332232 |
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| End bp | 3334409 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504267 |
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| Product | 23S rRNA m(2)G2445 methyltransferase |
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| Protein accession | YP_001188496 |
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| Protein GI | 146308031 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.30746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000000188031 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGATC GTTACGAAAT CGTGCTGACC TGCCCCAAGG GCCTCGAAGG ACTATTGCTG
GAAGAGGCCA GGGCACTGGG ACTGGAGGAG GCGCGCGAGC AGACTGCCGC GGTGCGTGGC
CAGGCCGAGC TGGAGGTCGC CTACCGCCTG TGCCTGTGGT CGCGCCTGGC CAACCGCGTG
CTGCTGGTGC TGTCGCGGTT TTCCATGAAT AACGCCGAGG AGCTCTACGA GGGCGTCAAG
GCGGTGGACT GGCGCGACCA CCTGGAGCCG GCCGGCAGCC TGGCGGTGGA GTTCAGCGGC
CACGGCTCGG GAATCGACAA CAGCCACTTC GGCGCGCTCA AGGTCAAGGA CGCCATCGTC
GACCGCCTGC GTACGGCCGG TGGCGAGCGG CCCAGCATCG ACAAGATCAA TCCGGACCTG
CGCGTGCATC TGCGTCTGGA TCGCGGCGAG GCCGTGCTGT CGCTGGACCT TTCCGGTCAC
AGCCTGCACC AGCGTGGCTA TCGCCTGCAG CAGGGGGCCG CGCCGCTCAA GGAAAACCTC
GCCGCCGCAG TGCTGATCCG CGCCGGCTGG CCGCGCATCG CCGCCGAGGG CGGCGCGCTG
GCCGACCCCA TGTGCGGTGT CGGCACCTTC CTCATCGAGG CGGCGCTGAT GGCCGCCGAT
GTGGCGCCCA ATCTCAAGCG CGAACGCTGG GGGTTCTCCA ACTGGCTCGG GCATGTGCCG
GCGATCTGGA AGAAGCTGCA TGCCGAGGCC GAACAGCGCG CGGCGGCCGG CCTGGCCAGG
CCGCCCCTGT GGATTCGCGG CTATGAAGCC GACCCACGGC TGATCCAGCC TGGGCGCAAT
AACGTCGAGC GCGCCGGGCT GTCCGACTGG GTGAAGATCT ACCAGGGCGA GCTGGGCAGT
TTCGAGCCGC GGCCGGACCA GAACCAGAAG GGCCTGGTGA TCAGCAACCC GCCCTATGGC
GAGCGCCTGG GCGACGAAGC CAGTCTGCTG TATCTCTATC AGAACCTTGG CGAGCGCCTG
CGTCAGGCTT GCCTGGGCTG GGAGGCAGCG GTGTTCACCG GAGCTCCCGA GCTGGGCAAG
CGCATGGGCC TGCGCAGCCA CAAGCAGTAT TCGTTCTGGA ACGGCGCGCT GGCGTGCAAG
CTGCTGCTGA TCAAGGTGCA GACCGAGCAG TTCGTCACCG GCGAGCGGCG CACCAGGACC
GAGGACGAAC CAGTGGCGGA GGCGTCGTCA CAGGCGCGCC TGTCCGAGGG GGGGCAGATG
TTCGCCAACC GCCTGCAGAA GAACCTCAAG CAACTGGGCA AGTGGGCGCG CCGCGAGGGG
GTGGAGTGCT ACCGCCTGTA CGATGCCGAT ATGCCCGAGT ACGCCCTGGC GGTGGACCTG
TACCGCGACT GGGTGCACGT GCAGGAATAT GCCGCGCCGC GTTCGGTCGA TCCGGACAAG
GCGCAGGCGC GTCTGCTCGA TGCCCTGGCC GCGATCCCCC AGGCGCTGGG CGTGGCGCAG
AGCCGAGTGG CGATCAAGCG CCGCGAGCGC CAGACCGGCA CCAAGCAGTA TCAGCGCCAG
GCTGCCCAGG GCCAGTTCAT GGAGGTGAGC GAAGGCGGCG TCAAACTGCT GGTCAACCTC
ACCGACTATC TGGATACCGG CCTGTTCCTT GATCACCGTC CGCTGCGCCT GCGCATCCAG
CGTGAGGCGG CCGGCAAGCG TTTCCTCAAC CTGTTCTGCT ACACCGCCAC GGCCACCGTG
CATGCGGCCA AGGGCGGGGC ACGCAGCACT ACCAGCGTCG ACCTGTCGAA AACCTACCTG
GACTGGGCGC GGCGCAACCT GTCGCTCAAC GGCTTTTCCG ACAAGCATCG CCTGGAGCAG
GGCGACGTGA TGGCCTGGCT GGCCGAGGAT CGTGGCGAGT ACGACCTGAT CTTCATCGAC
CCGCCGACCT TCTCCAACTC CAAGCGTATG GAAGGTGTGT TCGATGTGCA GCGCGACCAC
GTCGAGTTGC TCGACCTGGC CATGGCCCGC CTGGCCGGTG GCGGGGTGCT GTACTTCTCC
AACAACTTCC GCAAGTTCCA GCTCGACGAG AGTCTGGTGG CGCGTTACCA GGTCGAGGAG
ATCAGCGCGC AGACCCTGGA TCCGGACTTT GCCCGTAACC CGAAGATCCA CCGCGCCTGG
CGCTTCACCG CTCGCTGA
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| Protein sequence | MSDRYEIVLT CPKGLEGLLL EEARALGLEE AREQTAAVRG QAELEVAYRL CLWSRLANRV
LLVLSRFSMN NAEELYEGVK AVDWRDHLEP AGSLAVEFSG HGSGIDNSHF GALKVKDAIV
DRLRTAGGER PSIDKINPDL RVHLRLDRGE AVLSLDLSGH SLHQRGYRLQ QGAAPLKENL
AAAVLIRAGW PRIAAEGGAL ADPMCGVGTF LIEAALMAAD VAPNLKRERW GFSNWLGHVP
AIWKKLHAEA EQRAAAGLAR PPLWIRGYEA DPRLIQPGRN NVERAGLSDW VKIYQGELGS
FEPRPDQNQK GLVISNPPYG ERLGDEASLL YLYQNLGERL RQACLGWEAA VFTGAPELGK
RMGLRSHKQY SFWNGALACK LLLIKVQTEQ FVTGERRTRT EDEPVAEASS QARLSEGGQM
FANRLQKNLK QLGKWARREG VECYRLYDAD MPEYALAVDL YRDWVHVQEY AAPRSVDPDK
AQARLLDALA AIPQALGVAQ SRVAIKRRER QTGTKQYQRQ AAQGQFMEVS EGGVKLLVNL
TDYLDTGLFL DHRPLRLRIQ REAAGKRFLN LFCYTATATV HAAKGGARST TSVDLSKTYL
DWARRNLSLN GFSDKHRLEQ GDVMAWLAED RGEYDLIFID PPTFSNSKRM EGVFDVQRDH
VELLDLAMAR LAGGGVLYFS NNFRKFQLDE SLVARYQVEE ISAQTLDPDF ARNPKIHRAW
RFTAR
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