| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3008 |
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| Symbol | |
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| ID | 5107489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3330724 |
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| End bp | 3332160 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640504266 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001188495 |
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| Protein GI | 146308030 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000000000331484 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCAGC GGTTTCGCCA ACTGGCGCTG AGCGCCCTGC TACTGCCCCT CGCCCTTTCC
TGCCAAGCCG CCAGCGGCGC CCTTCCCGCC AAGGTCGAAC AGGCGTTGAA GGCCAACAAG
ATTTCCGACG CTTCCCTCGC CGTGATGACC GTGCCGCTGG GCGGCCAGGC CGGCGGCCTG
CAGTTCAACG CTGACGTTTC GGTCAACCCG GCCTCCACCA TGAAGCTGGT GACCACCTAT
GCGGCCCTGG AGCTGCTCGG TCCCAATCAC CAGTGGAAGA CCGAGTTCTA TGCCGACGGC
CCGCTCAAGG ACGGCGTGCT GCACGGCAAC CTCTACCTCA AGGGTGGCGG CGATCCGAAG
CTGAACATGG AACGTCTCTG GTTGCTGCTG CGCGACCTGC GCATCAATGG CGTGCGCCAG
GTACAGGGCG ATCTGGTACT GGACCGCAGC TTCTTCGTCG CGCCGCAGCT ACCGGCCTTC
AACGACGACG GCGGCGATGC CAACAAGCCC TTCCTGGTGA CCCCGGACTC GCTGCTGGTC
AACCTCAAGG CGCAGCGCTT CATCACCCGC GCCGATGGCG GCAAGGTGCA CATCGCCATG
GACCCGCCGA TCGCCAGCGT GCGCATCGAC AACCAAGTCA GGCTGCTCAA GGCCGCGCCC
TGCCCGGCCT GGCCGGACGT GCGTTACAAC GCCGTGGAGC AGTACGACGG CACCACCCTG
ATCGTCAGCG GCCAGCTGGC CGAGGGCTGC ACGGCGCAGA CCTACCTGTC GCTGCTCGAT
CACCCCAGCT ATGCCGCCGG TGCGGTTCGC GGCATCTGGC AGGAGCTGGG CGGCAAGATT
CTCGGCAAGG ATCGCATGGC CCCGATACCG GACAAGGCCC GCCTGCTGGT ACGCGCCTAT
TCTCCGGATG TGGTGGAGAT CGTCCGCGAC ATCAACAAGT ACAGCAACAA CACCATGGCG
CGGCAGCTGT TTCTCAGCAT CGGCGCGCAG TTCCGCACCG ACGCCGACAA GGACGATGCC
ATGGCCGCAC AACGGGTGAT CCGCAGCTGG CTGGCGCGCA AAGGCATCAC CGCGCCACAC
CTGGTGATGG AGAACGGTTC AGGTCTGTCG CGTGCCGAGC GCATCAGTGC GCGCGAAATG
GCCCTGATTC TCCAGGCCGC CTGGCGCAGC CCCTATGCCG CCGAGTTCCG CAGCTCGATG
CCGCTGGTGG CCATGGACGG CACCATGCGT CGGCGCCTGC AACGCACGCC GCTGGTGGGC
GAAGCGCATA TCAAGACCGG CACCCTGAAC AACGTGCGCG CCATCGCCGG CTACAGCCGC
GACAGCAACG GCCAGGACTG GGCCGTGGTG GCCATCCTCA ACGACCCCAA ACCCTGGGGC
GCCACCTCGA TTCTCGATCA GGTGCTGCTG TACACCTATA ACCAGCCCAA GCGCTGA
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| Protein sequence | MIQRFRQLAL SALLLPLALS CQAASGALPA KVEQALKANK ISDASLAVMT VPLGGQAGGL
QFNADVSVNP ASTMKLVTTY AALELLGPNH QWKTEFYADG PLKDGVLHGN LYLKGGGDPK
LNMERLWLLL RDLRINGVRQ VQGDLVLDRS FFVAPQLPAF NDDGGDANKP FLVTPDSLLV
NLKAQRFITR ADGGKVHIAM DPPIASVRID NQVRLLKAAP CPAWPDVRYN AVEQYDGTTL
IVSGQLAEGC TAQTYLSLLD HPSYAAGAVR GIWQELGGKI LGKDRMAPIP DKARLLVRAY
SPDVVEIVRD INKYSNNTMA RQLFLSIGAQ FRTDADKDDA MAAQRVIRSW LARKGITAPH
LVMENGSGLS RAERISAREM ALILQAAWRS PYAAEFRSSM PLVAMDGTMR RRLQRTPLVG
EAHIKTGTLN NVRAIAGYSR DSNGQDWAVV AILNDPKPWG ATSILDQVLL YTYNQPKR
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